YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254710514
Organism:	Brucella pinnipedialis B2/94
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254710514.

Description	E-value	Query Range	Subject Range
gi\|32699284 - gi\|32699284\|gb\|AAO39767.1\| BP26 [Brucella melitensis biovar Abortus] gi\|254694154 - gi\|254694154\|ref\|ZP_05155982.1\| hypothetical protein Babob3T_05719 [Brucella abortus bv. 3 str. Tuly...	239.0	[0..1]	[250..1]
gi\|49090355 - gi\|49090355\|gb\|AAT51971.1\| Omp28 precursor [Brucella melitensis]	239.0	[0..1]	[250..1]
gi\|82700288 - gi\|82700288\|ref\|YP_414862.1\| immunoreactive 28 kDa outer membrane protein [Brucella melitensis biova... gi\|32699294, gi\|... - gi\|82616389\|emb\|CAJ11450.1\| immunoreactive 28 kDa outer membrane protein [Brucella melitensis biovar... BP26_BRUA1 - 26 kDa periplasmic immunogenic protein OS=Brucella abortus (strain S19) GN=bp26 PE=1 SV=2 gi\|237789167, gi... - gi\|237815869\|ref\|ZP_04594866.1\| Protein of unknown function DUF541 [Brucella abortus str. 2308 A], g...	239.0	[0..1]	[250..1]
gi\|83375967 - gi\|83375967\|gb\|ABC17803.1\| BP26 [Brucella sp. SSO-1]	218.0	[0..1]	[234..1]
gi\|110634423, gi... - gi\|69275357\|ref\|ZP_00611269.1\| Protein of unknown function DUF541 [Mesorhizobium sp. BNC1], gi\|68193...	218.0	[0..11]	[249..5]
gi\|78036915, gi\|... - gi\|78048485\|ref\|YP_364660.1\| putative outer membrane protein [Xanthomonas campestris pv. vesicatoria...	211.0	[0..9]	[249..5]
gi\|21243499, gi\|... - gi\|21243499\|ref\|NP_643081.1\| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306], gi\|...	211.0	[0..9]	[249..5]
gi\|21227673, gi\|... - gi\|21227673\|ref\|NP_633595.1\| hypothetical protein MM_1571 [Methanosarcina mazei Go1], gi\|20906066\|gb...	206.0	[0..2]	[250..6]
gi\|86282639, gi\|... - gi\|86358537\|ref\|YP_470429.1\| hypothetical protein RHE_CH02935 [Rhizobium etli CFN 42], gi\|86282639\|g...	205.0	[0..1]	[250..1]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTRASNFLA ASFSTIMLVG AFSLPAFAQE NQMTTQPARI AVTGEGMMTA SPDMAILNLS  60
   61 VLRQAKTARE AMTANNEAMT KVLDAMKKAG IEDRDLQTGG INIQPIYVYP DDKNNLKEPT 120
  121 ITGYSVSTSL TVRVRELANV GKILDESVTL GVNQG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.619	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.614	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.543	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.520	N/A	N/A	d.81.1	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View	Download	0.519	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain

Predicted Domain #2

Region A:
Residues: [156-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLNLVNDNP SAVINEARKR AVANAIAKAK TLADAAGVGL GRVVEISELS RPPMPMPIAR  60
   61 GQFRTMLAAA PDNSVPIAAG ENSYNVSVNV VFEIK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.420	0.864	periplasmic space	c.47.1	Thioredoxin-like
View	Download	0.695	0.002	periplasmic space	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.541	0.000	periplasmic space	d.57.1	DNA damage-inducible protein DinI
View	Download	0.456	N/A	N/A	d.57.1	DNA damage-inducible protein DinI
View	Download	0.368	N/A	N/A	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits