YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254708145
Organism:	Brucella pinnipedialis M163/99/10
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254708145.

Description	E-value	Query Range	Subject Range
gi\|32699284 - gi\|32699284\|gb\|AAO39767.1\| BP26 [Brucella melitensis biovar Abortus] gi\|254694154 - gi\|254694154\|ref\|ZP_05155982.1\| hypothetical protein Babob3T_05719 [Brucella abortus bv. 3 str. Tuly...	239.0	[0..1]	[250..1]
gi\|49090355 - gi\|49090355\|gb\|AAT51971.1\| Omp28 precursor [Brucella melitensis]	239.0	[0..1]	[250..1]
gi\|82700288 - gi\|82700288\|ref\|YP_414862.1\| immunoreactive 28 kDa outer membrane protein [Brucella melitensis biova... gi\|32699294, gi\|... - gi\|82616389\|emb\|CAJ11450.1\| immunoreactive 28 kDa outer membrane protein [Brucella melitensis biovar... BP26_BRUA1 - 26 kDa periplasmic immunogenic protein OS=Brucella abortus (strain S19) GN=bp26 PE=1 SV=2 gi\|237789167, gi... - gi\|237815869\|ref\|ZP_04594866.1\| Protein of unknown function DUF541 [Brucella abortus str. 2308 A], g...	239.0	[0..1]	[250..1]
gi\|83375967 - gi\|83375967\|gb\|ABC17803.1\| BP26 [Brucella sp. SSO-1]	218.0	[0..1]	[234..1]
gi\|110634423, gi... - gi\|69275357\|ref\|ZP_00611269.1\| Protein of unknown function DUF541 [Mesorhizobium sp. BNC1], gi\|68193...	218.0	[0..11]	[249..5]
gi\|78036915, gi\|... - gi\|78048485\|ref\|YP_364660.1\| putative outer membrane protein [Xanthomonas campestris pv. vesicatoria...	211.0	[0..9]	[249..5]
gi\|21243499, gi\|... - gi\|21243499\|ref\|NP_643081.1\| outer membrane protein [Xanthomonas axonopodis pv. citri str. 306], gi\|...	211.0	[0..9]	[249..5]
gi\|21227673, gi\|... - gi\|21227673\|ref\|NP_633595.1\| hypothetical protein MM_1571 [Methanosarcina mazei Go1], gi\|20906066\|gb...	206.0	[0..2]	[250..6]
gi\|86282639, gi\|... - gi\|86358537\|ref\|YP_470429.1\| hypothetical protein RHE_CH02935 [Rhizobium etli CFN 42], gi\|86282639\|g...	205.0	[0..1]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTRASNFLA ASFSTIMLVG AFSLPAFAQE NQMTTQPARI AVTGEGMMTA SPDMAILNLS  60
   61 VLRQAKTARE AMTANNEAMT KVLDAMKKAG IEDRDLQTGG INIQPIYVYP DDKNNLKEPT 120
  121 ITGYSVSTSL TVRVRELANV GKILDESVTL GVNQG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLNLVNDNP SAVINEARKR AVANAIAKAK TLADAAGVGL GRVVEISELS RPPMPMPIAR  60
   61 GQFRTMLAAA PDNSVPIAAG ENSYNVSVNV VFEIK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.420	0.864	periplasmic space	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits