YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238860592, gi...
Organism:	Escherichia coli BW2952
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238860592, gi....

Description	E-value	Query Range	Subject Range
gi\|30041695, gi\|... - gi\|30063442\|ref\|NP_837613.1\| hypothetical protein S2168 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|24052400, gi\|... - gi\|24113382\|ref\|NP_707892.1\| hypothetical protein SF2058 [Shigella flexneri 2a str. 301], gi\|2405240...	315.0	[0..1]	[310..2]
gi\|92110337 - gi\|92110337\|emb\|CAJ87605.1\| putative exported protein ErfK [Escherichia coli]	313.0	[0..1]	[310..2]
gi\|75196052 - gi\|75196052\|ref\|ZP_00706122.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c...	313.0	[0..1]	[310..2]
gi\|81241616, gi\|... - gi\|82777468\|ref\|YP_403817.1\| hypothetical protein SDY_2243 [Shigella dysenteriae Sd197], gi\|81241616...	312.0	[0..1]	[310..1]
gi\|117624178, gi... - gi\|117624178\|ref\|YP_853091.1\| hypothetical protein APECO1_6023 [Escherichia coli APEC O1], gi\|115513...	312.0	[0..1]	[310..2]
gi\|26108732, gi\|... - gi\|26248328\|ref\|NP_754368.1\| hypothetical protein c2476 [Escherichia coli CFT073], gi\|26108732\|gb\|AA... gi\|226900772, gi... - gi\|237704406\|ref\|ZP_04534887.1\| erfK/srfK [Escherichia sp. 3_2_53FAA], gi\|226900772\|gb\|EEH87031.1\| e... gi\|75242804 - gi\|75242804\|ref\|ZP_00726510.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110343750, gi... - gi\|110642158\|ref\|YP_669888.1\| hypothetical protein ECP_1988 [Escherichia coli 536], gi\|110343750\|gb\|... gi\|91211241, gi\|... - gi\|91211241\|ref\|YP_541227.1\| hypothetical protein UTI89_C2228 [Escherichia coli UTI89], gi\|91072815\|... gi\|227885541, gi... - gi\|227885541\|ref\|ZP_04003346.1\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972], gi\|2278...	312.0	[0..1]	[310..2]
gi\|75214801 - gi\|75214801\|ref\|ZP_00713290.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c...	312.0	[0..1]	[310..2]
gi\|110805975, gi... - gi\|110805975\|ref\|YP_689495.1\| hypothetical protein SFV_2062 [Shigella flexneri 5 str. 8401], gi\|1106...	311.0	[0..1]	[310..2]
gi\|75186790 - gi\|75186790\|ref\|ZP_00700057.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c...	311.0	[0..1]	[310..2]
gi\|208731098, gi... - gi\|208816755\|ref\|ZP_03257875.1\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC... gi\|208738776, gi... - gi\|208818653\|ref\|ZP_03258973.1\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC... gi\|217317349, gi... - gi\|217329581\|ref\|ZP_03445660.1\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW... gi\|188998695, gi... - gi\|189010742\|ref\|ZP_02809080.2\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC... gi\|189360771, gi... - gi\|189403413\|ref\|ZP_02795306.2\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC... gi\|254593092, gi... - gi\|254793692\|ref\|YP_003078529.1\| conserved protein with NAD(P)-binding Rossmann-fold domain [Escheri... gi\|25323512, gi\|... - pir\|\|G85823 hypothetical protein erfK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12516167, gi\|... - gi\|15802471\|ref\|NP_288497.1\| hypothetical protein Z3150 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|13362253, gi\|... - gi\|15832039\|ref\|NP_310812.1\| hypothetical protein ECs2785 [Escherichia coli O157:H7], gi\|13362253\|db... gi\|13362253, gi\|... - gi\|15832039\|ref\|NP_310812.1\| hypothetical protein ECs2785 [Escherichia coli O157:H7 str. Sakai], gi\|...	310.0	[0..1]	[310..1]

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Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVNILCSF ALLFASHTSL AVTYPLPPEG SRLVGQSFTV TVPDHNTQPL ETFAAQYGQG  60
   61 LSNMLEANPG ADVFLPKSGS QLTIPQQLIL PDTVRKGIVV NVAEMRLYYY PPDSNTVEVF 120
  121 PIGIGQAGRE TPRNWVTTVE RKQEAPTWTP TPNTRREYAK RGESLPAFVP AGPDNPMGLY 180
  181 AIYIGRLYAI HGTNANFGIG LRVSQGCIRL RNDDIKYLFD NVPVGTRVQI IDQPVKYTTE 240
  241 PDGSNWLEVH EPLSRNRAEY ESDRKVPLPV TPSLRAFING QEVDVNRANA ALQRRSGMPV 300
  301 QISSGSRQMF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.09691
Match:	1y7mA
Description:	Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.877949200621699	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: