YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238911712
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238911712.

Description	E-value	Query Range	Subject Range
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	0.0	[1..462]	[1..462]
gi\|188015255, gi... - gi\|188015255\|gb\|EDU53377.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|189355541, gi... - gi\|189355541\|gb\|EDU73960.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168763698, gi... - gi\|189366180\|gb\|EDU84596.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168771141, gi... - gi\|189360031\|gb\|EDU78450.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|187768709, gi... - gi\|187768709\|gb\|EDU32553.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168783422, gi... - gi\|188999230\|gb\|EDU68216.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168789436, gi... - gi\|189370972\|gb\|EDU89388.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC8... gi\|209912173, gi... - gi\|209918914\|ref\|YP_002292998.1\| pyridine nucleotide transhydrogenase [Escherichia coli SE11], gi\|20... gi\|217318050, gi... - gi\|217328703\|ref\|ZP_03444784.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|218360937, gi... - gi\|218554169\|ref\|YP_002387082.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI1], gi\|21... gi\|218558472, gi... - gi\|218558472\|ref\|YP_002391385.1\| pyridine nucleotide transhydrogenase [Escherichia coli S88], gi\|218... gi\|218351896, gi... - gi\|218695164\|ref\|YP_002402831.1\| pyridine nucleotide transhydrogenase [Escherichia coli 55989], gi\|2... gi\|218369818, gi... - gi\|218699832\|ref\|YP_002407461.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI39], gi\|2... gi\|218705102, gi... - gi\|218705102\|ref\|YP_002412621.1\| pyridine nucleotide transhydrogenase [Escherichia coli UMN026], gi\|... gi\|168800859, gi... - gi\|189376895\|gb\|EDU95311.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC5... gi\|169754973, gi... - gi\|170020045\|ref\|YP_001724999.1\| pyridine nucleotide transhydrogenase [Escherichia coli ATCC 8739], ... gi\|169889101, gi... - gi\|170081266\|ref\|YP_001730586.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|195938992 - gi\|195938992\|ref\|ZP_03084374.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. ... gi\|208725163, gi... - gi\|208810647\|ref\|ZP_03252523.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208816653, gi... - gi\|208816653\|ref\|ZP_03257773.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208819628, gi... - gi\|208819628\|ref\|ZP_03259948.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|209158336, gi... - gi\|209396936\|ref\|YP_002270674.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... PNTB_SHIFL - NAD(P) transhydrogenase subunit beta OS=Shigella flexneri GN=pntB PE=3 SV=1 gi\|24112989, gi\|... - gi\|24112989\|ref\|NP_707499.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 301], g... PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|30041365, gi\|... - gi\|30063116\|ref\|NP_837287.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 2457T],... PNTB_ECOLI - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta... PNTB_ECO57 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O157:H7 GN=pntB PE=3 SV=1 PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6 GN=pntB PE=3 SV=1 gi\|254592619, gi... - gi\|254793219\|ref\|YP_003078056.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|253973564, gi... - gi\|254161663\|ref\|YP_003044771.1\| pyridine nucleotide transhydrogenase [Escherichia coli B str. REL60... gi\|13361775, gi\|... - gi\|15831562\|ref\|NP_310335.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. Sak... gi\|253977759, gi... - gi\|254288452\|ref\|YP_003054200.1\| pyridine nucleotide transhydrogenase [Escherichia coli BL21(DE3)], ... gi\|110615123, gi... - gi\|110805575\|ref\|YP_689095.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 5 str. 8401], ... gi\|251785060, gi... - gi\|251785060\|ref\|YP_002999364.1\| hypothetical protein B21_01561 [Escherichia coli BL21], gi\|24237733... gi\|238900818, gi... - gi\|238900818\|ref\|YP_002926614.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|237705542, gi... - gi\|237705542\|ref\|ZP_04536023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227886040, gi... - gi\|227886040\|ref\|ZP_04003845.1\| pyridine nucleotide transhydrogenase [Escherichia coli 83972], gi\|22... gi\|1742636, gi\|8... - gi\|89108443\|ref\|AP_002223.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli st... gi\|91210813, gi\|... - gi\|91210813\|ref\|YP_540799.1\| pyridine nucleotide transhydrogenase [Escherichia coli UTI89], gi\|91072... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... gi\|15802016, gi\|... - gi\|15802016\|ref\|NP_288037.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 EDL933],... gi\|117623788, gi... - gi\|117623788\|ref\|YP_852701.1\| pyridine nucleotide transhydrogenase [Escherichia coli APEC O1], gi\|11... gi\|124529243, gi... - gi\|124529243\|ref\|ZP_01700318.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli B], gi\|12450... gi\|82776829, gi\|... - gi\|82776829\|ref\|YP_403178.1\| pyridine nucleotide transhydrogenase [Shigella dysenteriae Sd197], gi\|8... gi\|75512965, gi\|... - gi\|75512965\|ref\|ZP_00735446.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 536... gi\|74312073, gi\|... - gi\|74312073\|ref\|YP_310492.1\| pyridine nucleotide transhydrogenase [Shigella sonnei Ss046], gi\|738555... gi\|194436470, gi... - gi\|83587937\|ref\|ZP_00926563.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 101... gi\|187731810, gi... - gi\|75178503\|ref\|ZP_00698549.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella boydii BS51... gi\|194419839, gi... - gi\|83570992\|ref\|ZP_00922434.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella dysenteriae... gi\|75212939, gi\|... - gi\|75212939\|ref\|ZP_00712937.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B17... gi\|192927426, gi... - gi\|75257021\|ref\|ZP_00728581.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E22... gi\|157155678, gi... - gi\|75190642\|ref\|ZP_00703909.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E24... gi\|75195682, gi\|... - gi\|75195682\|ref\|ZP_00705752.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli HS]...	0.0	[1..462]	[1..462]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	0.0	[1..462]	[1..462]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	0.0	[1..462]	[1..462]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	0.0	[1..462]	[1..462]
gi\|37526084, gi\|... - gi\|37526084\|ref\|NP_929428.1\| pyridine nucleotide transhydrogenase [Photorhabdus luminescens subsp. l...	0.0	[1..462]	[1..462]
gi\|62127701, gi\|... - gi\|62180068\|ref\|YP_216485.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri...	0.0	[1..462]	[1..462]
gi\|102621429 - gi\|102621429\|gb\|ABF71059.1\| NADP transhydrogenase beta subunit [Enterobacter cloacae]	0.0	[1..462]	[1..462]
gi\|162418619, gi... - gi\|77636206\|ref\|ZP_00798282.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis Ango... gi\|25284883 - pir\|\|AG0280 NAD(P) transhydrogenase (AB-specific) (EC 1.6.1.2) - Yersinia pestis (strain CO92) gi\|45436745, gi\|... - gi\|45441882\|ref\|NP_993421.1\| pyridine nucleotide transhydrogenase [Yersinia pestis biovar Microtus s... gi\|22126022, gi\|... - gi\|22126022\|ref\|NP_669445.1\| pyridine nucleotide transhydrogenase [Yersinia pestis KIM], gi\|21958971... gi\|218929394, gi... - gi\|218929394\|ref\|YP_002347269.1\| pyridine nucleotide transhydrogenase [Yersinia pestis CO92], gi\|161... gi\|51596548, gi\|... - gi\|51596548\|ref\|YP_070739.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis IP 32... gi\|229688671, gi... - gi\|229898381\|ref\|ZP_04513528.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229894980, gi... - gi\|229894980\|ref\|ZP_04510158.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|229837820, gi... - gi\|229837820\|ref\|ZP_04457979.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|152958614, gi... - gi\|77629298\|ref\|ZP_00791884.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pseudotuber... gi\|149292198, gi... - gi\|149365785\|ref\|ZP_01887820.1\| NAD(P) transhydrogenase subunit beta [Yersinia pestis CA88-4125], gi... gi\|145209839, gi... - gi\|145598143\|ref\|YP_001162219.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Pestoides F],... Q66AA8\|Q66AA8_YERPS - NAD(P) transhydrogenase subunit beta precursor - Yersinia pseudotuberculosis gi\|89104625, gi\|... - gi\|89104625\|ref\|ZP_01177163.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia pestis biov... gi\|108779559, gi... - gi\|108807646\|ref\|YP_651562.1\| pyridine nucleotide transhydrogenase [Yersinia pestis Antiqua], gi\|108... gi\|165920845, gi... - gi\|165927177\|ref\|ZP_02223009.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|108811925, gi... - gi\|229902228\|ref\|ZP_04517349.1\| pyridine nucleotide transhydrogenase, beta subunit [Yersinia pestis ... gi\|165990317, gi... - gi\|166010615\|ref\|ZP_02231513.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166210796, gi... - gi\|166210796\|ref\|ZP_02236831.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|167400947, gi... - gi\|167400947\|ref\|ZP_02306453.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Antiqu... gi\|166958926, gi... - gi\|167422114\|ref\|ZP_02313867.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Orient... gi\|167056020, gi... - gi\|167424833\|ref\|ZP_02316586.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis biovar Mediae... gi\|167469358 - gi\|167469358\|ref\|ZP_02334062.1\| NAD(P) transhydrogenase, beta subunit [Yersinia pestis FV-1] gi\|169750713, gi... - gi\|170024179\|ref\|YP_001720684.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis Y... gi\|186895608, gi... - gi\|186895608\|ref\|YP_001872720.1\| pyridine nucleotide transhydrogenase [Yersinia pseudotuberculosis P...	0.0	[1..462]	[1..462]
gi\|15602617, gi\|... - gi\|15602617\|ref\|NP_245689.1\| pyridine nucleotide transhydrogenase [Pasteurella multocida subsp. mult...	0.0	[1..462]	[1..474]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGLVTAAY IVAAILFIFS LAGLSKHETS RQGNNFGIAG MAIALLATIF GPDTGNVAWI  60
   61 LVAMIIGGAI GIRMAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLYHD ASLAPVLVNI 120
  121 HLTEVFLGIF IGAVTFTGSI VAFGKLRGKI SSKPLMLPNR HKMNLAALVV SFLLLLVFVR 180
  181 TESVGLQVLA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLMTIIALAF GWHLVASIGG ADMPVVVSML NSYSGWAAAA AGFMLSNDLL IVTGALVGSS  60
   61 GAILSYIMCK AMNRSFISVI AGGFGTDGSS TGDDQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [288-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGEHREITAE ETAEMLKNSH SVIITPGYGM AVAQAQYPVA EITEKLRARG INVRFGIHPV  60
   61 AGRLPGHMNV LLAEAKVPYD IVLEMDEIND DFADTDTVLV IGANDTVNPA AQDDPRSPIA 120
  121 GMPVLEVWKA QNVVVFKRSM NTGYAGVQNP LFFKENTQML FGDAKASVDA ILKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.154902
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits