YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254693624
Organism:	Brucella abortus bv. 3 str. Tulya
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254693624.

Description	E-value	Query Range	Subject Range
gi\|92117343, gi\|... - gi\|92117343\|ref\|YP_577072.1\| preprotein translocase, YajC subunit [Nitrobacter hamburgensis X14], gi...	136.0	[0..1]	[113..1]
gi\|83593100, gi\|... - gi\|83593100\|ref\|YP_426852.1\| protein translocase subunit yajC [Rhodospirillum rubrum ATCC 11170], gi... gi\|48764191 - ref\|ZP_00268743.1\| COG1862: Preprotein translocase subunit YajC [Rhodospirillum rubrum]	136.0	[0..1]	[110..8]
gi\|24374631, gi\|... - gi\|24374631\|ref\|NP_718674.1\| preprotein translocase subunit YajC [Shewanella oneidensis MR-1], gi\|24... SO3112 - preprotein translocase YajC subunit	132.0	[0..1]	[108..1]
gi\|124547490, gi... - gi\|124547490\|ref\|ZP_01706375.1\| preprotein translocase, YajC subunit [Shewanella putrefaciens 200], ... gi\|120598343, gi... - gi\|120598343\|ref\|YP_962917.1\| preprotein translocase subunit YajC [Shewanella sp. W3-18-1], gi\|12055... gi\|77808773, gi\|... - gi\|77816278\|ref\|ZP_00815477.1\| YajC [Shewanella putrefaciens CN-32], gi\|77808773\|gb\|EAO93194.1\| YajC...	132.0	[0..1]	[108..1]
gi\|27379847, gi\|... - gi\|27379847\|ref\|NP_771376.1\| preprotein tranlocase protein [Bradyrhizobium japonicum USDA 110], gi\|2...	132.0	[0..1]	[112..1]
gi\|85716185, gi\|... - gi\|85716185\|ref\|ZP_01047160.1\| Preprotein translocase subunit, YajC [Nitrobacter sp. Nb-311A], gi\|85...	132.0	[0..1]	[113..1]
gi\|91781854, gi\|... - gi\|91781854\|ref\|YP_557060.1\| preprotein translocase subunit YajC [Burkholderia xenovorans LB400], gi... gi\|117991282, gi... - gi\|118038619\|ref\|ZP_01510023.1\| preprotein translocase, YajC subunit [Burkholderia phytofirmans PsJN...	131.0	[0..2]	[108..14]
gi\|113969725, gi... - gi\|113969725\|ref\|YP_733518.1\| preprotein translocase subunit YajC [Shewanella sp. MR-4], gi\|11388440... gi\|78691799, gi\|... - gi\|78691799\|ref\|ZP_00856393.1\| YajC [Shewanella sp. MR-7], gi\|78508802\|gb\|EAP22230.1\| YajC [Shewanel...	131.0	[0..1]	[108..1]
gi\|25302588 - gi\|25302588\|pir\|\|AG3386 hypothetical exported protein BMEI1077 [imported] - Brucella melitensis (str... gi\|237815321, gi... - gi\|237815321\|ref\|ZP_04594319.1\| preprotein translocase, YajC subunit [Brucella abortus str. 2308 A],... gi\|17983045, gi\|... - gi\|17987360\|ref\|NP_539994.1\| hypothetical protein BMEI1077 [Brucella melitensis 16M], gi\|17983045\|gb...	131.0	[0..1]	[113..8]
gi\|75675962, gi\|... - gi\|75675962\|ref\|YP_318383.1\| preprotein translocase subunit, YajC [Nitrobacter winogradskyi Nb-255],...	131.0	[0..1]	[106..1]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVTPAFAQA SGSVVGPDML MSILPFILIF VIMYFLIIRP QRTQMKKRQE MLNSVRRGDT  60
   61 VVTGGGIVGK VLKVVDDNEL ELEIADGVRI RVVRATLMDV RVKGEPVADN KNK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.657577
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits