YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229900021, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229900021, gi....

Description	E-value	Query Range	Subject Range
gi\|57545650, gi\|... - gi\|73853240\|ref\|YP_308736.1\| transposase/IS protein [Escherichia coli], gi\|73476824\|gb\|AAZ76439.1\| A... gi\|218369856, gi... - gi\|218699870\|ref\|YP_002407499.1\| transposase/IS protein [Escherichia coli IAI39], gi\|218369856\|emb\|C... gi\|254039290, gi... - gi\|254039290\|ref\|ZP_04873331.1\| transposase for insertion sequence [Escherichia sp. 1_1_43], gi\|2268... gi\|218349965, gi... - gi\|218692802\|ref\|YP_002405914.1\| transposase/IS protein [Escherichia coli UMN026], gi\|218349965\|emb\|... gi\|91206286, gi\|... - gi\|91206286\|ref\|YP_538640.1\| putative transposase [Escherichia coli UTI89], gi\|91075737\|gb\|ABE10617.... gi\|188488968, gi... - gi\|188493769\|ref\|ZP_03001039.1\| IS100, transposition helper protein [Escherichia coli 53638], gi\|188...	6.0E-61	[1..260]	[1..260]
gi\|26248359, gi\|... - gi\|26248359\|ref\|NP_754399.1\| transposase/IS protein [Escherichia coli CFT073], gi\|26108763\|gb\|AAN809... gi\|91211270, gi\|... - gi\|91211270\|ref\|YP_541256.1\| transposase/IS protein [Escherichia coli UTI89], gi\|91072844\|gb\|ABE0772...	9.0E-61	[1..260]	[1..260]
gi\|18462602, gi\|... - gi\|31983610\|ref\|NP_858162.1\| transposase/IS protein [Shigella flexneri 2a str. 301], gi\|18462602\|gb\|... gi\|18462602, gi\|... - gi\|31983610\|ref\|NP_858162.1\| transposase/IS protein [Shigella flexneri 2a str. 301], gi\|18462602\|gb\|...	3.0E-60	[1..260]	[1..260]
gi\|51589426, gi\|... - gi\|51598162\|ref\|YP_072353.1\| transposase/IS protein [Yersinia pseudotuberculosis IP 32953], gi\|51596... gi\|194428978, gi... - gi\|75212684\|ref\|ZP_00712682.1\| COG1484: DNA replication protein [Escherichia coli B171], gi\|75209814... gi\|191167612, gi... - gi\|75230267\|ref\|ZP_00716764.1\| COG1484: DNA replication protein [Escherichia coli B7A], gi\|75229250\|... gi\|75241882, gi\|... - gi\|75242330\|ref\|ZP_00726092.1\| COG1484: DNA replication protein [Escherichia coli F11], gi\|75242274\|... gi\|162420419, gi... - gi\|77636315\|ref\|ZP_00798390.1\| COG1484: DNA replication protein [Yersinia pestis Angola], gi\|7763598... gi\|148872312, gi... - gi\|149192654\|ref\|YP_001293886.1\| transposase/IS protein [Yersinia pestis CA88-4125], gi\|148872312\|gb... gi\|145212195, gi... - gi\|145601115\|ref\|YP_001165191.1\| transposase/IS protein [Yersinia pestis Pestoides F], gi\|145600970\|... gi\|165988896, gi... - gi\|166012191\|ref\|ZP_02233089.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|165920333, gi... - gi\|165927719\|ref\|ZP_02223551.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|166961246, gi... - gi\|167422993\|ref\|ZP_02314746.1\| putative transposition helper protein [Yersinia pestis biovar Orient... gi\|166207895, gi... - gi\|166214643\|ref\|ZP_02240678.1\| putative transposition helper protein [Yersinia pestis biovar Antiqu... gi\|194424273, gi... - gi\|83587629\|ref\|ZP_00926256.1\| COG1484: DNA replication protein [Escherichia coli 101-1], gi\|1944367... gi\|167466871, gi... - gi\|167471023\|ref\|ZP_02335727.1\| putative transposition helper protein [Yersinia pestis FV-1], gi\|167... gi\|167056261, gi... - gi\|167427151\|ref\|ZP_02318904.1\| putative transposition helper protein [Yersinia pestis biovar Mediae... gi\|186696687, gi... - gi\|186897383\|ref\|YP_001874495.1\| transposase/IS protein [Yersinia pseudotuberculosis PB1/+], gi\|1868... gi\|14594863, gi\|... - gi\|83404856\|ref\|YP_424870.1\| transposase/IS protein [Escherichia coli], gi\|83404810\|ref\|YP_424824.1\|... gi\|170122632, gi... - gi\|170769072\|ref\|ZP_02903525.1\| IS100 transposase orfB [Escherichia albertii TW07627], gi\|170768851\|... gi\|5420123, gi\|4... - gi\|5420123\|emb\|CAB46598.1\| IS100 transposase [Yersinia pseudotuberculosis], gi\|49658931\|emb\|CAF28558... gi\|195183302 - gi\|195183302\|dbj\|BAG66841.1\| Orf2 of IS100 [Escherichia coli O111:H-] gi\|4106647, gi\|1... - gi\|4106647\|emb\|CAA21402.1\| ORFB [Yersinia pestis], gi\|4106579\|emb\|CAA21334.1\| unnamed protein produc... gi\|215264284, gi... - gi\|215486212\|ref\|YP_002328643.1\| transposase/IS protein [Escherichia coli O127:H6 str. E2348/69], gi... gi\|40787978, gi\|... - gi\|40787978\|ref\|NP_955514.1\| transposase/IS protein [Yersinia pestis KIM], gi\|3883092\|gb\|AAC82752.1\|... gi\|5832425, gi\|4... - gi\|5832425\|emb\|CAB54879.1\| putative ATP-binding protein [Yersinia pestis CO92], gi\|40787861\|ref\|NP_3... gi\|89103829, gi\|... - gi\|89105853\|ref\|ZP_01178366.1\| COG1484: DNA replication protein [Yersinia pestis biovar Orientalis s... gi\|108808547, gi... - gi\|108810101\|ref\|YP_654017.1\| transposase/IS protein [Yersinia pestis Antiqua], gi\|108810087\|ref\|YP_... gi\|108813817, gi... - gi\|229904878\|ref\|ZP_04519988.1\| transposase [Yersinia pestis Nepal516], gi\|229678193\|gb\|EEO74299.1\| ... gi\|110345167, gi... - gi\|110643575\|ref\|YP_671305.1\| transposase/IS protein [Escherichia coli 536], gi\|110643150\|ref\|YP_670...	4.0E-60	[2..260]	[1..259]
gi\|77633603 - gi\|77633603\|ref\|ZP_00795726.1\| COG1484: DNA replication protein [Yersinia pestis Angola]	4.0E-60	[2..260]	[10..268]
gi\|221589259, gi... - gi\|98978968\|gb\|ABF59980.1\| ATP-binding protein [Escherichia coli], gi\|222104831\|ref\|YP_002539320.1\| ... gi\|75514029 - gi\|75514029\|ref\|ZP_00736359.1\| COG1484: DNA replication protein [Escherichia coli 53638] gi\|194358515, gi... - gi\|194447071\|ref\|YP_002039121.1\| IS100 transposase orfB [Salmonella enterica subsp. enterica serovar...	4.0E-60	[2..260]	[1..259]
gi\|75259138, gi\|... - gi\|75259138\|ref\|ZP_00730486.1\| COG1484: DNA replication protein [Escherichia coli E22], gi\|193062952...	5.0E-60	[2..260]	[1..259]
gi\|110343786, gi... - gi\|110642194\|ref\|YP_669924.1\| transposase/IS protein [Escherichia coli 536], gi\|110343786\|gb\|ABG7002... gi\|227885507, gi... - gi\|227885507\|ref\|ZP_04003312.1\| ATP-binding protein [Escherichia coli 83972], gi\|227837520\|gb\|EEJ479... gi\|191170250, gi... - gi\|75242823\|ref\|ZP_00726529.1\| COG1484: DNA replication protein [Escherichia coli F11], gi\|191170250...	7.0E-60	[2..260]	[1..259]
gi\|108779650, gi... - gi\|108807737\|ref\|YP_651653.1\| transposase/IS protein [Yersinia pestis Antiqua], gi\|108779650\|gb\|ABG1...	7.0E-60	[2..260]	[1..259]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMELQHQRL MALAGQLQLE SLISAAPALS QQAVDQEWSY MDFLEHLLHE EKLARHQRKQ  60
   61 AMYTRMAAFP AVKTFEEYDF TFATGAPQKQ LQSLRSLSFI ERNENIVLLG PSGVGKTHLA 120
  121 IAMGYEAVRA GIKVRFTTAA DLLLQLSTAQ RQGRYKTTLQ RGVMAPRLLI IDEIGYLPFS 180
  181 QEEAKLFFQV IAKRYEKSAM ILTSNLPFGQ WDQTFAGDAA LTSAMLDRIL HHSHVVQIKG 240
  241 ESYRLRQKRK AGVIAEANPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2qgzA
Description:	No description for 2qgzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits