YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254697227
Organism:	Brucella abortus bv. 2 str. 86/8/59
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254697227.

Description	E-value	Query Range	Subject Range
gi\|67920525, gi\|... - gi\|67920525\|ref\|ZP_00514045.1\| Phosphoribosylformylglycinamidine synthetase PurS [Crocosphaera watso...	125.0	[0..2]	[79..5]
gi\|7447494 - pir\|\|S76654 hypothetical protein - Synechocystis sp. (strain PCC 6803) Y519_SYNY3 - UPF0062 protein slr0519 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=slr0519 PE=3 SV... PURS_SYNY3 - Phosphoribosylformylglycinamidine synthase subunit PurS OS=Synechocystis sp. (strain PCC 6803 / Kazu...	125.0	[0..2]	[79..14]
gi\|83310639, gi\|... - gi\|83310639\|ref\|YP_420903.1\| phosphoribosylformylglycinamidine synthase [Magnetospirillum magneticum...	121.0	[0..3]	[79..16]
gi\|15074707 - gi\|15074707\|emb\|CAC46352.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15965526 - gi\|15965526\|ref\|NP_385879.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Sinorhizobium ...	120.0	[0..1]	[80..1]
gi\|23013895 - gi\|23013895\|ref\|ZP_00053744.1\| COG1828: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS comp...	120.0	[0..2]	[79..1]
gi\|90334917, gi\|... - gi\|90420942\|ref\|ZP_01228847.1\| phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Au... gi\|90334917, gi\|... - gi\|90420942\|ref\|ZP_01228847.1\| phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Au...	119.0	[0..2]	[80..1]
gi\|114768877 - gi\|114768877\|ref\|ZP_01446503.1\| Phosphoribosylformylglycinamidine synthase [alpha proteobacterium HT... gi\|114768877, gi... - gi\|114768877\|ref\|ZP_01446503.1\| Phosphoribosylformylglycinamidine synthase [alpha proteobacterium HT...	119.0	[0..2]	[79..1]
gi\|25313966 - pir\|\|AB2803 conserved hypothetical protein Atu1844 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17740289, gi\|... - gi\|17935734\|ref\|NP_532524.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Agrobacterium ...	118.0	[0..1]	[79..1]
gi\|114707063, gi... - gi\|114707063\|ref\|ZP_01439962.1\| phosphoribosylformylglycinamidine synthase [Fulvimarina pelagi HTCC2...	117.0	[0..1]	[79..1]
gi\|150396711, gi... - gi\|150396711\|ref\|YP_001327178.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Sinorhizob...	116.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKARVTVTL KNGVLDPQGK AIVGALGSLG FDGVSSVRQG KVFDLELEGS DKAKAEADLK  60
   61 AMCEKLLANT VIEDYSIAIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1t4aA
Description:	Structure of B. Subtilis PurS C2 Crystal Form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylformylglycinamidine synthase activity	3.91714662866347	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	3.23248136726321	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.69415085754524	bayes_pls_golite062009
catalytic activity	1.60678631669946	bayes_pls_golite062009
ligase activity	0.64521156831328	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: