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View Structure Prediction Details

Protein: LUT5_ARATH
Organism: Arabidopsis thaliana
Length: 595 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LUT5_ARATH.

Description E-value Query
Range
Subject
Range
gi|12321297, gi|... - pir||F86441 probable cytochrome P450 [imported] - Arabidopsis thaliana, gi|12321297|gb|AAG50718.1|AC...
438.0 [0..3] [595..1]
gi|115496944, gi... - gi|94574282|gb|AAI16042.1| Cytochrome P450, family 2, subfamily C, polypeptide 18 [Bos taurus], gi|1...
388.0 [0..98] [568..20]
CP2CP_MESAU - Cytochrome P450 2C25 OS=Mesocricetus auratus GN=CYP2C25 PE=2 SV=1
387.0 [0..81] [568..3]
gi|116174726, gi... - gi|55824550|gb|AAV66395.1| cytochrome P450 isoform 2J [Ovis aries], gi|116174726|ref|NP_001070678.1|...
387.0 [0..65] [570..1]
CYP2C8 - cytochrome P450, family 2, subfamily C, polypeptide 8
385.0 [0..83] [568..5]
gi|87162770 - gi|87162770|gb|ABD28565.1| E-class P450, group I [Medicago truncatula]
385.0 [0..24] [595..57]
CP2CK_MACFA - Cytochrome P450 2C20 OS=Macaca fascicularis GN=CYP2C20 PE=2 SV=1
384.0 [0..83] [568..5]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAFPLSYT PTITVKPVTY SRRSNFVVFS SSSNGRDPLE ENSVPNGVKS LEKLQEEKRR  60
   61 AELSARIASG AFTVRKSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSTVKNGLS KIGIPSNVLD FMFDWTGSDQ DYPKVPEAKG SIQAVRNEAF FIPLYELFLT  60
   61 YGGIFRLTFG PKSFLIVSDP SIAKHILKDN AKAYSKGILA EILDFVMGKG LIPADGEIWR 120
  121 RRRRAIVPAL HQKYVAAMIS LFGEASDRLC QKLDAAALKG EEVEMESLFS RLTLDIIGKA 180
  181 VFNYDFDSLT NDTGVIEAVY TVLREAEDRS VSPIPVWDIP IWKDISPRQR KVATSLKLIN 240
  241 DTLDDLIATC KRMVEEEELQ FHEEYMNERD PSILHFLLAS GDDVSSKQLR DDLMTMLIAG 300
  301 HETSAAVLTW TFYLLTTEPS VVAKLQEEVD SVIGDRFPTI QDMKKLKYTT RVMNESLRLY 360
  361 PQPPVLIRRS IDNDILGEYP IKRGEDIFIS VWNLHRSPLH WDDAEKFNPE RWPLDGPNPN 420
  421 ETNQNFSYLP FGGGPRKCIG DMFASFENVV AIAMLIRRFN FQIAPGAPPV KMTTGATIHT 480
  481 TEGLKLTVTK RTKPLDIPSV PILPMDTSRD EVSSALS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1tqnA
Description: Crystal Structure of Human Microsomal P450 3A4
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle