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View Structure Prediction Details

Protein: ALMT5_ARATH
Organism: Arabidopsis thaliana
Length: 537 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALMT5_ARATH.

Description E-value Query
Range
Subject
Range
gi|5734718, gi|2... - gi|5734718|gb|AAD49983.1|AC008075_16 F24J5.16 [Arabidopsis thaliana], pir||D96710 F24J5.16 [imported...
379.0 [0..5] [537..1]

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Predicted Domain #1
Region A:
Residues: [1-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKMGSVPE QNTEKLLWQS SDVADSRDSK FRCCSWRALY EAPAKLYALG HSDRRKLYFS  60
   61 IKMGIALALC SFVIFLKEPL QDASKFAVWA ILTVVLIFEY YVGATLVKGF NRALGTMLAG 120
  121 GLALGVAQLS VLAGEFEEVI IVICIFLAGF GASYLKLYAS MKPYEYAFRV FKLTYCIVLV 180
  181 SGNNSRDFLS TAYYRILLIG LGATICLLVN VFLFPIWAGE DLHKLVAKNF KNVANSLEGC 240
  241 VNGYLQCVEY ERIPSKILTY QASDDPLYSG YRSAVQSTSQ EDSLLDFAIW EPPHGPYKTF 300
  301 NHPWKNYVKL SGAVRHCAFT VMAMHGCILS EIQASPEKRH VFSNELRRVG NEGAKVLRLF 360
  361 GEKVEKMEKL SLSLGEILKD VQRAAEALQM KIDSKSYLLV NSESWAAIKE QAEAEEAREN 420
  421 DQEAKDDETK VIKSLSQIWD TNNNNNHQSN DQSQHWMSTE SMMLKNREMW PSMSFIDGTV 480
  481 VNEIECKVYE SASSLSLATF ASLLIEFVAR LQNIVNAFEE LSTKAGFKDA VDQIPKV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle