YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238863252, gi...
Organism:	Escherichia coli BW2952
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238863252, gi....

Description	E-value	Query Range	Subject Range
gi\|38639731, gi\|... - gi\|38639731\|ref\|NP_943500.1\| putative cytoplasmic protein [Klebsiella pneumoniae], gi\|38016829\|gb\|AA... gi\|168998698, gi... - gi\|238549717\|dbj\|BAH66068.1\| putative cytoplasmic protein [Klebsiella pneumoniae NTUH-K2044], gi\|168...	255.0	[0..1]	[292..20]
gi\|83571668, gi\|... - gi\|83571668\|ref\|ZP_00923108.1\| hypothetical protein Sdys1_01000384 [Shigella dysenteriae 1012], gi\|1...	255.0	[0..1]	[292..1]
gi\|187429985, gi... - gi\|75179970\|ref\|ZP_00699957.1\| hypothetical protein SboyB_01000298 [Shigella boydii BS512], gi\|18773...	254.0	[0..1]	[292..1]
gi\|81247179, gi\|... - gi\|82545768\|ref\|YP_409715.1\| hypothetical protein SBO_3400 [Shigella boydii Sb227], gi\|81247179\|gb\|A...	254.0	[0..1]	[292..1]
gi\|82778772, gi\|... - gi\|82778772\|ref\|YP_405121.1\| hypothetical protein SDY_3665 [Shigella dysenteriae Sd197], gi\|81242920...	253.0	[0..1]	[292..1]
gi\|30043568, gi\|... - gi\|30065306\|ref\|NP_839477.1\| hypothetical protein S4333 [Shigella flexneri 2a str. 2457T], gi\|300435... gi\|24053882, gi\|... - gi\|24114674\|ref\|NP_709184.1\| hypothetical protein SF3430 [Shigella flexneri 2a str. 301], gi\|2405388...	253.0	[0..1]	[289..1]
gi\|110616791, gi... - gi\|110807243\|ref\|YP_690763.1\| hypothetical protein SFV_3416 [Shigella flexneri 5 str. 8401], gi\|1106...	253.0	[0..1]	[289..1]
gi\|188493692, gi... - gi\|75516121\|ref\|ZP_00738239.1\| hypothetical protein Ecol5_01000181 [Escherichia coli 53638], gi\|1884... gi\|157162888, gi... - gi\|75197342\|ref\|ZP_00707412.1\| hypothetical protein EcolH_01003158 [Escherichia coli HS], gi\|1571628... gi\|254163339, gi... - gi\|254163339\|ref\|YP_003046447.1\| predicted transposase [Escherichia coli B str. REL606], gi\|25397524... gi\|83588724, gi\|... - gi\|83588724\|ref\|ZP_00927348.1\| hypothetical protein Ecol1_01000357 [Escherichia coli 101-1], gi\|1944... gi\|251786661, gi... - gi\|251786661\|ref\|YP_003000965.1\| hypothetical protein B21_03215 [Escherichia coli BL21], gi\|24237893... gi\|124528184, gi... - gi\|124528184\|ref\|ZP_01699517.1\| putative transposase, YhgA family protein [Escherichia coli B], gi\|1... gi\|253979396, gi... - gi\|254290089\|ref\|YP_003055837.1\| predicted transposase [Escherichia coli BL21(DE3)], gi\|253979396\|gb... gi\|169753281, gi... - gi\|170018353\|ref\|YP_001723307.1\| hypothetical protein EcolC_0302 [Escherichia coli ATCC 8739], gi\|16...	253.0	[0..1]	[292..1]
gi\|209756458, gi... - pir\|\|E91160 hypothetical protein ECs4253 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189374268, gi... - gi\|189374268\|gb\|EDU92684.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7], gi\|13363727\|db... gi\|189369918, gi... - gi\|189369918\|gb\|EDU88334.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|217321877, gi... - gi\|217325656\|ref\|ZP_03441740.1\| putative transposase, YhgA [Escherichia coli O157:H7 str. TW14588], ... gi\|15833507, gi\|... - gi\|15833507\|ref\|NP_312280.1\| hypothetical protein ECs4253 [Escherichia coli O157:H7 str. Sakai], gi\|...	252.0	[0..1]	[292..1]
gi\|193061708, gi... - gi\|75260300\|ref\|ZP_00731568.1\| hypothetical protein EcolE2_01000188 [Escherichia coli E22], gi\|19306... gi\|75211777, gi\|... - gi\|75211777\|ref\|ZP_00711841.1\| hypothetical protein EcolB_01001133 [Escherichia coli B171], gi\|19442... gi\|157157136, gi... - gi\|75188185\|ref\|ZP_00701452.1\| hypothetical protein EcolE_01001429 [Escherichia coli E24377A], gi\|15...	252.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQSSTPH DALFKLFLRQ PDTARDFLAF HLPAPIHALC DMKTLKLESS SFIDDDLRES  60
   61 YSDVLWSVKT EQGPGYIYCL IEHQSTSNKL IAFRMMRYAI AAMQNHLDAG YKTLPMVVPL 120
  121 LFYHGIES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.773	N/A	N/A	a.1.1	Globin-like
View	Download	0.654	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.654	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.652	N/A	N/A	d.58.20	NAD-binding domain of HMG-CoA reductase
View	Download	0.645	N/A	N/A	a.1.1	Globin-like

Predicted Domain #2

Region A:
Residues: [129-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYPYSLCWLD CFADPKLARQ LYASAFPLID VTVMPDDEIM QHRRMALLEL IQKHIRQRDL  60
   61 MGLVEQMACL LSSGYANDRQ IKGLFNYILQ TGDAVRFNDF IDGVAERSPK HKESLMTIAE 120
  121 RLRQEGEQSK ALHIAKIMLE SGVPLADIMR FTGLSEEELA AASQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.858	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.851	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.811	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.809	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.759	N/A	N/A	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits