YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254037450, gi...
Organism:	Escherichia sp. 1_1_43
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254037450, gi....

Description	E-value	Query Range	Subject Range
gi\|110613649, gi... - gi\|110804101\|ref\|YP_687621.1\| DNA-binding transcriptional activator CaiF [Shigella flexneri 5 str. 8...	311.0	[0..1]	[166..1]
gi\|74310653, gi\|... - gi\|74310653\|ref\|YP_309072.1\| transcriptional regulator of cai operon [Shigella sonnei Ss046], gi\|738...	308.0	[0..1]	[166..1]
gi\|91070669, gi\|... - gi\|91209095\|ref\|YP_539081.1\| transcriptional activatory protein CaiF [Escherichia coli UTI89], gi\|91... gi\|226902089, gi... - gi\|237704177\|ref\|ZP_04534658.1\| transcriptional activatory protein caiF [Escherichia sp. 3_2_53FAA],... gi\|26106355, gi\|... - gi\|26245958\|ref\|NP_751997.1\| Transcriptional activatory protein caiF [Escherichia coli CFT073], gi\|2... gi\|117622325, gi... - gi\|117622325\|ref\|YP_851238.1\| DNA-binding transcriptional activator CaiF [Escherichia coli APEC O1],...	303.0	[0..1]	[166..1]
gi\|82775436, gi\|... - gi\|82775436\|ref\|YP_401783.1\| transcriptional regulator of cai operon [Shigella dysenteriae Sd197], g...	285.0	[0..1]	[153..1]
gi\|188490459, gi... - gi\|75515622\|ref\|ZP_00737779.1\| hypothetical protein Ecol5_01000727 [Escherichia coli 53638], gi\|1884... gi\|194439677, gi... - gi\|83584922\|ref\|ZP_00923579.1\| hypothetical protein Ecol1_01003881 [Escherichia coli 101-1], gi\|1944... gi\|85674291, gi\|... - gi\|89106918\|ref\|AP_000698.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 subst... gi\|124531332, gi... - gi\|124531332\|ref\|ZP_01701660.1\| transcriptional regulator of cai operon [Escherichia coli B], gi\|124... EG13451 - cai operon transcriptional activator / Transcriptional activator of cai operon gi\|161367661 - gi\|161367661\|ref\|NP_285729.2\| DNA-binding transcriptional activator CaiF [Escherichia coli O157:H7 E... gi\|161485952 - gi\|161485952\|ref\|NP_705990.2\| DNA-binding transcriptional activator CaiF [Shigella flexneri 2a str. ... gi\|161486554 - gi\|161486554\|ref\|NP_835773.2\| DNA-binding transcriptional activator CaiF [Shigella flexneri 2a str. ... gi\|189375998, gi... - gi\|189375998\|gb\|EDU94414.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|170021608, gi... - gi\|170021608\|ref\|YP_001726562.1\| DNA-binding transcriptional activator CaiF [Escherichia coli ATCC 8... gi\|169887532, gi... - gi\|170079697\|ref\|YP_001729017.1\| DNA-binding transcriptional activator [Escherichia coli str. K-12 s... gi\|170680121, gi... - gi\|170680121\|ref\|YP_001742152.1\| transcriptional activatory protein CaiF [Escherichia coli SMS-3-5],... gi\|194434551, gi... - gi\|194434551\|ref\|ZP_03066809.1\| transcriptional activatory protein CaiF [Shigella dysenteriae 1012],... gi\|195937708 - gi\|195937708\|ref\|ZP_03083090.1\| DNA-binding transcriptional activator CaiF [Escherichia coli O157:H7... gi\|208728939, gi... - gi\|208809138\|ref\|ZP_03251475.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... gi\|208735797, gi... - gi\|208814520\|ref\|ZP_03255849.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... gi\|162139821 - gi\|162139821\|ref\|NP_308064.2\| DNA-binding transcriptional activator CaiF [Escherichia coli O157:H7 s... gi\|188014313, gi... - gi\|188014313\|gb\|EDU52435.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|189356105, gi... - gi\|189356105\|gb\|EDU74524.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|168762797, gi... - gi\|189366948\|gb\|EDU85364.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|254791171, gi... - gi\|254791171\|ref\|YP_003076008.1\| transcriptional regulator of cai operon [Escherichia coli O157:H7 s... gi\|168766725, gi... - gi\|189363999\|gb\|EDU82418.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|254160160, gi... - gi\|254160160\|ref\|YP_003043268.1\| DNA-binding transcriptional activator [Escherichia coli B str. REL6... gi\|187767703, gi... - gi\|187767703\|gb\|EDU31547.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|253976270, gi... - gi\|254286963\|ref\|YP_003052711.1\| DNA-binding transcriptional activator [Escherichia coli BL21(DE3)],... gi\|168781734, gi... - gi\|189000790\|gb\|EDU69776.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|251783601, gi... - gi\|251783601\|ref\|YP_002997905.1\| hypothetical protein B21_00037 [Escherichia coli BL21], gi\|24237587... gi\|189374974, gi... - gi\|189374974\|gb\|EDU93390.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 str. E... gi\|238899439, gi... - gi\|238899439\|ref\|YP_002925235.1\| DNA-binding transcriptional activator [Escherichia coli BW2952], gi... gi\|208821424, gi... - gi\|208821424\|ref\|ZP_03261744.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... EG13451 - cai operon transcriptional activator / Transcriptional activator of cai operon gi\|209161244, gi... - gi\|209399844\|ref\|YP_002268642.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 s... gi\|217320575, gi... - gi\|217324354\|ref\|ZP_03440438.1\| transcriptional activatory protein CaiF [Escherichia coli O157:H7 st... gi\|218368440, gi... - gi\|218698454\|ref\|YP_002406083.1\| DNA-binding transcriptional activator CaiF [Escherichia coli IAI39]... CAIF_ECOLI - Transcriptional activatory protein caiF - Escherichia coli gi\|218430392, gi... - gi\|218703295\|ref\|YP_002410814.1\| DNA-binding transcriptional activator CaiF [Escherichia coli UMN026... CAIF_SHIFL - Transcriptional activatory protein CaiF OS=Shigella flexneri GN=caiF PE=3 SV=1	247.0	[0..36]	[166..1]
gi\|193070967, gi... - gi\|75234155\|ref\|ZP_00718559.1\| hypothetical protein EcolE1_01003916 [Escherichia coli E110019], gi\|1... gi\|191168902, gi... - gi\|75227864\|ref\|ZP_00714574.1\| hypothetical protein EcolB7_01003771 [Escherichia coli B7A], gi\|19116... gi\|75208890, gi\|... - gi\|75208890\|ref\|ZP_00709167.1\| hypothetical protein EcolB_01003896 [Escherichia coli B171], gi\|19442... gi\|75194255, gi\|... - gi\|75194255\|ref\|ZP_00704325.1\| hypothetical protein EcolH_01000029 [Escherichia coli HS], gi\|1571595... gi\|157077925, gi... - gi\|75189138\|ref\|ZP_00702405.1\| hypothetical protein EcolE_01002419 [Escherichia coli E24377A], gi\|15... gi\|209910485, gi... - gi\|209917226\|ref\|YP_002291310.1\| DNA-binding transcriptional activator CaiF [Escherichia coli SE11],... gi\|218359387, gi... - gi\|218552619\|ref\|YP_002385532.1\| DNA-binding transcriptional activator CaiF [Escherichia coli IAI1],... gi\|218693506, gi... - gi\|218693506\|ref\|YP_002401173.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 55989]... gi\|193066219, gi... - gi\|75255689\|ref\|ZP_00727455.1\| hypothetical protein EcolE2_01004278 [Escherichia coli E22], gi\|19306...	247.0	[0..36]	[166..1]
gi\|75237173, gi\|... - gi\|75237173\|ref\|ZP_00721221.1\| hypothetical protein EcolF_01003976 [Escherichia coli F11], gi\|191174... gi\|161486339 - gi\|161486339\|ref\|NP_751997.2\| DNA-binding transcriptional activator CaiF [Escherichia coli CFT073] gi\|227837896, gi... - gi\|227885067\|ref\|ZP_04002872.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 83972],... gi\|162138513 - gi\|162138513\|ref\|YP_539081.2\| DNA-binding transcriptional activator CaiF [Escherichia coli UTI89] gi\|218363743, gi... - gi\|218556974\|ref\|YP_002389887.1\| DNA-binding transcriptional activator CaiF [Escherichia coli S88], ... gi\|110341839, gi... - gi\|110640247\|ref\|YP_667975.1\| DNA-binding transcriptional activator CaiF [Escherichia coli 536], gi\|...	243.0	[0..36]	[166..1]
gi\|16501351, gi\|... - gi\|25359143\|pir\|\|AF0510 transcription activator CaiF STY0078 [imported] - Salmonella enterica subsp.... gi\|205271191, gi... - gi\|205351410\|ref\|YP_002225211.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub... gi\|16763458, gi\|... - gi\|16763458\|ref\|NP_459073.1\| DNA-binding transcriptional activator CaiF [Salmonella typhimurium LT2]... gi\|161361759, gi... - gi\|161612395\|ref\|YP_001586360.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub... gi\|213427509 - gi\|213427509\|ref\|ZP_03360259.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213416822 - gi\|213416822\|ref\|ZP_03349966.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|29140611, gi\|... - gi\|29140611\|ref\|NP_803953.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|213163015 - gi\|213163015\|ref\|ZP_03348725.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|16759061 - gi\|16759061\|ref\|NP_454678.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|206707385, gi... - gi\|207855582\|ref\|YP_002242233.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=caiF] [protein=DNA-binding transcriptional activator CaiF] [protein_id=YP_005235714.1] [locati... gi\|238911127 - gi\|238911127\|ref\|ZP_04654964.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|214001272 - gi\|214001272\|ref\|ZP_03412007.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213864975 - gi\|213864975\|ref\|ZP_03387094.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213650151 - gi\|213650151\|ref\|ZP_03380204.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|213581920 - gi\|213581920\|ref\|ZP_03363746.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subs... gi\|62126265, gi\|... - gi\|62178632\|ref\|YP_215049.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|224466435, gi... - gi\|224581908\|ref\|YP_002635706.1\| transcriptional activator CaiF [Salmonella enterica subsp. enterica...	231.0	[0..36]	[166..1]
gi\|56126597, gi\|... - gi\|56412340\|ref\|YP_149415.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica subsp. ... gi\|197092752, gi... - gi\|197361277\|ref\|YP_002140912.1\| DNA-binding transcriptional activator CaiF [Salmonella enterica sub...	230.0	[0..36]	[166..1]
gi\|27528364 - gi\|27528364\|emb\|CAD48584.1\| putative transcriptional regulatory protein [Proteus sp. LE138]	220.0	[0..36]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHTIDIST ILIWPCLIAS KRVIARLLIC ETGVRMCEGY VEKPLYLLIA EWMMAENRWV  60
   61 IAREISIHFD IEHSKAVNTL TYILSEVTEI SCEVKMIPNK LEGRGCQCQR LVKVVDIDEQ 120
  121 IYARLRNNSR EKLVGVRKTP RIPAVPLTEL NREQKWQMML SKSMRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.210	0.957	regulation of transcription, DNA-dependent	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits