YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|239621261, gi...
Organism:	Bifidobacterium longum subsp. infantis CCUG 52486
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|239621261, gi....

Description	E-value	Query Range	Subject Range
RECA_STRAW - Protein RecA OS=Streptomyces avermitilis GN=recA PE=3 SV=1 RECA_STRAW - Protein RecA OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NC...	6.0E-91	[22..397]	[5..377]
gi\|66270756 - gi\|66270756\|gb\|AAY43691.1\| RecA/GFP fusion protein [Cloning vector pSJS1472]	1.0E-90	[17..368]	[1..352]
gi\|68198774, gi\|... - gi\|68233616\|ref\|ZP_00572731.1\| RecA bacterial DNA recombination protein [Frankia sp. EAN1pec], gi\|68...	2.0E-89	[21..364]	[4..347]
gi\|224288621 - gi\|224288621\|ref\|ZP_03648805.1\| recombinase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi\|227211909, gi... - gi\|227547654\|ref\|ZP_03977703.1\| recombination protein A [Bifidobacterium longum subsp. infantis ATCC... gi\|189427582, gi... - gi\|46191337\|ref\|ZP_00206783.1\| COG0468: RecA/RadA recombinase [Bifidobacterium longum DJO10A], gi\|18...	2.0E-89	[1..397]	[22..418]
RECA_MYCSM - (Q59560) Protein recA (Recombinase A) RECA_MYCS2 - Protein RecA OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=recA PE=1 SV=1	6.0E-89	[21..363]	[6..348]
gi\|42416897 - gi\|42416897\|gb\|AAS16330.1\| RecA [Mycobacterium neworleansense]	6.0E-89	[21..358]	[6..343]
gi\|42416871 - gi\|42416871\|gb\|AAS16317.1\| RecA [Mycobacterium mageritense]	7.0E-89	[21..363]	[6..348]
gi\|42416877 - gi\|42416877\|gb\|AAS16320.1\| RecA [Mycobacterium goodii]	1.0E-88	[21..363]	[6..348]
gi\|41408946, gi\|... - gi\|41408946\|ref\|NP_961782.1\| recombinase A [Mycobacterium avium subsp. paratuberculosis K-10], gi\|41...	1.0E-88	[21..357]	[64..400]
gi\|42416865 - gi\|42416865\|gb\|AAS16314.1\| RecA [Mycobacterium houstonense] gi\|42416869 - gi\|42416869\|gb\|AAS16316.1\| RecA [Mycobacterium farcinogenes] gi\|42416879 - gi\|42416879\|gb\|AAS16321.1\| RecA [Mycobacterium senegalense]	1.0E-88	[21..363]	[6..348]

Back

Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALETKPAKD PAAEDKHELD PKRKAALDTA LAQVEKSFGK GSAMRLGDQP EQNVEVIPTG  60
   61 SLALDMALGI GGLPKGRIVE IYGPESSGKT TLALHVVANA QKKGGVAAYI DAEHALDPAY 120
  121 ARKLGVDTDS LIVSQPDNGE QALEIADMLI RSGALDVIVI DSVAALVPKA EIEGEMGDSH 180
  181 VGLQARLMSQ ALRKMTGALA QAGTTAIFIN QLREKIGVFF GNPETTTGGK ALKFYASVRL 240
  241 DIRRIQTLKN GDEAVGNRTR VKVVKNKMAP PFKSAEFDML YGEGISREGS VIDMAQQVGV 300
  301 VKKSGSWFTY EGDQLGQGRE KVRQFLKDNP AITEEIENKV KAEFGLIGSA DQFAEDGEAA 360
  361 AAAAVSEAAA ADVAKDSKAA AAPAAKTTRA KAGTAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.522879
Match:	1ubcA
Description:	RecA protein, ATPase-domain; RecA protein, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits