YRC Public Data Repository - Protein Structure Prediction

Protein:	RS10_RHISN
Organism:	Sinorhizobium fredii NGR234
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS10_RHISN.

Description	E-value	Query Range	Subject Range
gi\|83312230, gi\|... - gi\|83312230\|ref\|YP_422494.1\| Ribosomal protein S10 [Magnetospirillum magneticum AMB-1], gi\|82947071\|...	152.0	[0..1]	[102..24]
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	152.0	[0..1]	[102..41]
RS10_RHOPB - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsJ PE=3 SV=1	148.0	[0..1]	[102..1]
gi\|52426104, gi\|... - gi\|52426104\|ref\|YP_089241.1\| 30S ribosomal protein S10 [Mannheimia succiniciproducens MBEL55E], gi\|5...	148.0	[0..1]	[102..20]
gi\|90417764, gi\|... - gi\|90417764\|ref\|ZP_01225676.1\| ribosomal protein S10 [Aurantimonas sp. SI85-9A1], gi\|90337436\|gb\|EAS... gi\|90417764, gi\|... - gi\|90417764\|ref\|ZP_01225676.1\| ribosomal protein S10 [Aurantimonas sp. SI85-9A1], gi\|90337436\|gb\|EAS...	147.0	[0..1]	[102..1]
RS10_THIDA - 30S ribosomal protein S10 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsJ PE=3 SV=1	147.0	[0..1]	[102..1]
RS10_RHILO - 30S ribosomal protein S10 OS=Rhizobium loti (strain MAFF303099) GN=rpsJ PE=3 SV=1 RS10_RHILO - 30S ribosomal protein S10 OS=Rhizobium loti GN=rpsJ PE=3 SV=1	146.0	[0..1]	[102..1]
gi\|83853390, gi\|... - gi\|83858567\|ref\|ZP_00952089.1\| 30S ribosomal protein S10 [Oceanicaulis alexandrii HTCC2633], gi\|8385...	146.0	[0..1]	[102..1]
RS10_BRASO - 30S ribosomal protein S10 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsJ PE=3 SV=1 RS10_BRASB - 30S ribosomal protein S10 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsJ PE=3 SV=1 RS10_RHOPT - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsJ PE=3 SV=1 RS10_BRAJA - 30S ribosomal protein S10 OS=Bradyrhizobium japonicum GN=rpsJ PE=3 SV=1 RS10_RHOPA - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris GN=rpsJ PE=1 SV=3 gi\|85715132, gi\|... - gi\|85715132\|ref\|ZP_01046116.1\| 30S ribosomal protein S10 [Nitrobacter sp. Nb-311A], gi\|85698047\|gb\|E... RS10_NITHX - 30S ribosomal protein S10 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsJ PE=3 SV=1 RS10_RHOP5 - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsJ PE=3 SV=1 RS10_BRADU - 30S ribosomal protein S10 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479... RS10_RHOPS - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsJ PE=3 SV=1 rpsJ - rpsJ 30S ribosomal protein S10 3659530:3659838 reverse MW:11668 RS10_NITWN - 30S ribosomal protein S10 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsJ PE=3 SV=1 RS10_RHOP2 - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsJ PE=3 SV=1	146.0	[0..1]	[102..1]
gi\|1075260 - gi\|1075260\|pir\|\|D64092 ribosomal protein S10 - Haemophilus influenzae (strain Rd KW20) gi\|46133133 - gi\|46133133\|ref\|ZP_00156632.2\| COG0051: Ribosomal protein S10 [Haemophilus influenzae R2866] gi\|48868599 - ref\|ZP_00321912.1\| COG0051: Ribosomal protein S10 [Haemophilus influenzae 86-028NP] gi\|1573786, gi\|1... - gi\|16272717\|ref\|NP_438935.1\| 30S ribosomal protein S10 [Haemophilus influenzae Rd KW20], gi\|1573786\|...	145.0	[0..1]	[102..16]

Back

Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGQNIRIRL KAFDHRILDA STREIVSTAK RTGASVRGPV PLPTRIEKFT VNRSPHVDKK  60
   61 SREQFEMRTH KRLLDIVDPT PQTVDALMKL DLAAGVDVEI KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits