YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|240255790, gi...
Organism:	Arabidopsis thaliana
Length:	741 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|240255790, gi....

Description	E-value	Query Range	Subject Range
gi\|5281040, gi\|7... - gi\|7267930\|emb\|CAB78272.1\| copper amine oxidase-like protein [Arabidopsis thaliana], gi\|5281040\|emb\|...	863.0	[0..2]	[741..17]
gi\|5733089 - gi\|5733089\|gb\|AAD49420.1\|AF172681_1 amine oxidase [Canavalia lineata]	796.0	[0..1]	[740..1]
gi\|113563909, gi... - gi\|115457476\|ref\|NP_001052338.1\| Os04g0269600 [Oryza sativa (japonica cultivar-group)], gi\|113563909...	772.0	[0..3]	[741..4]
gi\|86606020, gi\|... - gi\|86606020\|ref\|YP_474783.1\| tyramine oxidase [Synechococcus sp. JA-3-3Ab], gi\|86554562\|gb\|ABC99520.... gi\|86606020 - gi\|86606020\|ref\|YP_474783.1\| copper amine oxidase [Cyanobacteria bacterium Yellowstone A-Prime]	747.0	[0..55]	[739..3]
gi\|86558761, gi\|... - gi\|86610219\|ref\|YP_478981.1\| putative copper methylamine oxidase [Synechococcus sp. JA-2-3B'a(2-13)]... gi\|86610219 - gi\|86610219\|ref\|YP_478981.1\| putative copper methylamine oxidase [Cyanobacteria bacterium Yellowston...	743.0	[0..79]	[735..2]
gi\|159126367 - gi\|159126367\|gb\|EDP51483.1\| peroxisomal copper amine oxidase [Aspergillus fumigatus A1163] gi\|66851534, gi\|... - gi\|70998352\|ref\|XP_753898.1\| peroxisomal copper amine oxidase [Aspergillus fumigatus Af293], gi\|6685...	741.0	[0..76]	[741..15]
gi\|67901308, gi\|... - gi\|67901308\|ref\|XP_680910.1\| hypothetical protein AN7641.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	738.0	[0..75]	[741..14]
gi\|114189575, gi... - gi\|115433172\|ref\|XP_001216723.1\| peroxisomal copper amine oxidase [Aspergillus terreus NIH2624], gi\|...	733.0	[0..71]	[741..10]
gi\|38099617, gi\|... - gi\|39941804\|ref\|XP_360439.1\| hypothetical protein MG10751.4 [Magnaporthe grisea 70-15], gb\|EAA46940....	732.0	[0..79]	[738..2]

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Predicted Domain #1

Region A:
Residues: [1-741]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQKSFFRLI FLIVTAGFII SFTSTNFPHA PTRLLDCTDS SSSPLCASRN FLFNKQQPRP  60
   61 IPKHDPKPNT KNHDHVSDTP NHPLDPLTVS EINKIRSILS SHALFTSGTP HALHTVVLEE 120
  121 PEKNLVRHWE KGNPLPPRKA SVIARVGADT HVLTVDISTG RVDSENSPVR VSGYPMMTIE 180
  181 EMNDITVVPF SNADFNRTII SRGVNLTDVI CFPISCGWFG NKEENARVIK SQCFMTQGTP 240
  241 NFYMRPIEGL TILIDLDTKQ VIEITDTGRA IPIPGSTNTD YRFQKLATTD KTRPLNPISI 300
  301 EQPRGPSFVI EDNHLVKWAN WEFHLKPDPR AGVVISRVRV HDPDTHETRD VMYKGFVSEL 360
  361 FVPYMDPSDA WYFKTYMDAG EYGFGLQAMP LVPLNDCPRN AAYMDGVFAA ADGTPFVREN 420
  421 MVCIFESYAG DIGWRHSESP ITGIPIREVR PKVTLVVRMA ASVGNYDYII DYEFQTDGLI 480
  481 KAKVGLSGIL MVKGTTYQNK NQVEKDKDGN EEELHGTLLS ENVIGVIHDH YVTFYLDLDV 540
  541 DGPDNSFVKV NLKRQETEPG ESPRKSYLKA VRNIAKTEKD GQIKLSLYDP SEFHVINSGK 600
  601 TTRVGNPTGY KVVPRTTAAS LLDHDDPPQK RGAFTNNQIW VTPYNKSEQW AGGLFTYQSH 660
  661 GDDTLAVWSD RDRDIENKDI VVWYTLGFHH IPCQEDFPIM PTVSSSFDLK PVNFFERNPI 720
  721 LSAAPNFEHD LPVCGVQSVS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1w2zA
Description:	PSAO and Xenon
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits