YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238829547, gi...
Organism:	Enterococcus faecalis TUSoD Ef11
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238829547, gi....

Description	E-value	Query Range	Subject Range
gi\|114145792, gi... - gi\|32527737\|gb\|AAP86270.1\| Ac2-210 [Rattus norvegicus], gi\|114145792\|ref\|NP_001041363.1\| Ribosomal_L...	173.0	[0..3]	[115..10]
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	168.0	[0..3]	[115..10]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	167.0	[0..3]	[115..10]
gi\|76649602 - gi\|76649602\|ref\|XP_874889.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	167.0	[0..3]	[115..10]
gi\|55824570 - gi\|55824570\|gb\|AAV66405.1\| ribosomal protein L17 [Macaca fascicularis]	164.0	[0..3]	[115..6]
gi\|119626789, gi... - gi\|88947792\|ref\|XP_947749.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 1 [Homo s...	163.0	[0..3]	[115..10]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQITSAKA TAKTVRTSPR KARLVIDLIR GKSVADAISI LKFTPNKSAG IIEKVLMSAV  60
   61 ANAENNFDLD VESLVVSEAF VNEGPTMKRF RPRAKGSASP INKRTSHITV VVTEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1bxeA
Description:	Ribosomal protein L22
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits