YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254713683
Organism:	Brucella ceti M644/93/1
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254713683.

Description	E-value	Query Range	Subject Range
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	290.0	[0..1]	[257..1]
gi\|25284642, gi\|... - pir\|\|AI2900 succinate dehydrogenase iron-sulfur sdhB [imported] - Agrobacterium tumefaciens (strain ... gi\|15889898, gi\|... - gi\|17936517\|ref\|NP_533307.1\| succinate dehydrogenase catalytic subunit [Agrobacterium tumefaciens st...	284.0	[0..1]	[259..1]
gi\|113732109, gi... - gi\|167648792\|ref\|YP_001686455.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter sp. K31], ...	283.0	[0..1]	[257..1]
gi\|14024355, gi\|... - gi\|14024355\|dbj\|BAB50959.1\| succinate dehydrogenase iron-sulfur protein subunit [Mesorhizobium loti ...	282.0	[0..1]	[259..1]
gi\|23502752, gi\|... - gi\|23502752\|ref\|NP_698879.1\| succinate dehydrogenase iron-sulfur subunit [Brucella suis 1330], gi\|23... gi\|254704915 - gi\|254704915\|ref\|ZP_05166743.1\| succinate dehydrogenase iron-sulfur subunit [Brucella suis bv. 3 str...	282.0	[0..1]	[259..1]
gi\|83851590, gi\|... - gi\|83944808\|ref\|ZP_00957174.1\| succinate dehydrogenase [Oceanicaulis alexandrii HTCC2633], gi\|838515...	281.0	[0..1]	[259..1]
gi\|69153285, gi\|... - gi\|69935164\|ref\|ZP_00630144.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Parac... SDHB_PARDE - Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus denitrificans GN=sdhB PE=3 SV=1	281.0	[0..1]	[257..1]
gi\|86283577, gi\|... - gi\|86359475\|ref\|YP_471367.1\| succinate dehydrogenase iron-sulfur subunit [Rhizobium etli CFN 42], gi...	281.0	[0..1]	[259..1]
gi\|99035644, gi\|... - gi\|99078506\|ref\|YP_611764.1\| succinate dehydrogenase iron-sulfur subunit [Silicibacter sp. TM1040], ...	281.0	[0..1]	[259..1]
gi\|84392108, gi\|... - gi\|84500174\|ref\|ZP_00998440.1\| succinate dehydrogenase [Oceanicola batsensis HTCC2597], gi\|84392108\|...	281.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELALPKNS RMQEGKTWPR PDGATRVTEF RIYRWSPDDD ENPRIDTYYV DRDDCGPMVL  60
   61 DGLLYIKNKI DPTLTLRRSC REGICGSCAM NIDGANTLAC TKGMDDIKGT IKVYPLPHMP 120
  121 VVKDLVPDLN NFYAQHRSIE PWLKTVSPEP QKEWLQSHED RQKLDGLYEC ILCACCSTSC 180
  181 PSYWWNGDRY LGPAVLLQAY RWLIDSRDEA KGERLDNLED PFRLYRCHTI MNCAQTCPKG 240
  241 LNPAKAIAEI KKMMVERRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.221849
Match:	1zoyB
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits