YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238863570, gi...
Organism:	Escherichia coli BW2952
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238863570, gi....

Description	E-value	Query Range	Subject Range
gi\|117626660, gi... - gi\|117626660\|ref\|YP_859983.1\| specificity determinant for hsdM and hsdR [Escherichia coli APEC O1], ... gi\|91075572, gi\|... - gi\|91213998\|ref\|YP_543984.1\| specificity determinant for hsdM and hsdR [Escherichia coli UTI89], gi\|...	291.0	[0..1]	[464..1]
T1S_SALPO - Type-1 restriction enzyme StySPI specificity protein OS=Salmonella potsdam GN=hsdS PE=3 SV=1 gi\|79033 - gi\|79033\|pir\|\|A26652 type I site-specific deoxyribonuclease (EC 3.1.21.3) - Salmonella sp	290.0	[0..1]	[464..1]
gi\|197365231, gi... - gi\|197365231\|ref\|YP_002144868.1\| EcoKI restriction-modification system protein HsdS [Salmonella ente... gi\|214000632 - gi\|214000632\|ref\|ZP_03411367.1\| EcoKI restriction-modification system protein HsdS [Salmonella enter... gi\|213864869 - gi\|213864869\|ref\|ZP_03386988.1\| EcoKI restriction-modification system protein HsdS [Salmonella enter... gi\|213052555 - gi\|213052555\|ref\|ZP_03345433.1\| EcoKI restriction-modification system protein HsdS [Salmonella enter... gi\|16505640, gi\|... - gi\|25289196\|pir\|\|AB1069 chain S of type I restriction-modification system [imported] - Salmonella en... gi\|56416308, gi\|... - gi\|56416308\|ref\|YP_153383.1\| EcoKI restriction-modification system protein HsdS [Salmonella enterica... gi\|16763331 - gi\|16763331\|ref\|NP_458948.1\| specificity determinant for hsdM and hsdR [Salmonella enterica subsp. e... gi\|29144809, gi\|... - gi\|29144809\|ref\|NP_808151.1\| specificity determinant for hsdM and hsdR [Salmonella enterica subsp. e...	274.0	[0..1]	[464..1]
gi\|58427681, gi\|... - gi\|58583087\|ref\|YP_202103.1\| Type I restriction enzyme StySPI specificity protein [Xanthomonas oryza...	264.0	[0..5]	[464..8]
gi\|88792025, gi\|... - gi\|88810395\|ref\|ZP_01125652.1\| Type I restriction enzyme StySPI specificity protein [Nitrococcus mob...	252.0	[0..1]	[464..1]
gi\|25397750 - pir\|\|B87326 hypothetical protein CC0621 [imported] - Caulobacter crescentus gi\|16124874, gi\|... - gi\|16124874\|ref\|NP_419438.1\| type I restriction-modification system, S subunit [Caulobacter crescent... gi\|221233594, gi... - gi\|221233594\|ref\|YP_002516030.1\| type I restriction-modification system specificity subunit [Cauloba...	247.0	[0..3]	[425..17]
gi\|90425137, gi\|... - gi\|90425137\|ref\|YP_533507.1\| type I restriction enzyme StySPI specificity protein [Rhodopseudomonas ...	246.0	[0..4]	[461..3]
gi\|120557242, gi... - gi\|82741288\|ref\|ZP_00904013.1\| type I restriction-modification system, S subunit [Shewanella sp. W3-...	241.0	[0..5]	[425..4]
gi\|197240292, gi... - gi\|197262037\|ref\|ZP_03162111.1\| type I restriction enzyme StySJI specificity protein [Salmonella ent... T1S_SALTY - Type-1 restriction enzyme StySJI specificity protein OS=Salmonella typhimurium GN=hsdS PE=3 SV=1 T1S_SALTY - Type-1 restriction enzyme StySJI specificity protein OS=Salmonella typhimurium GN=hsdS PE=3 SV=1 T1S_SALTY - Type-1 restriction enzyme StySJI specificity protein OS=Salmonella typhimurium (strain LT2 / SGSC141... gi\|205330268, gi... - gi\|205330268\|gb\|EDZ17032.1\| type I restriction enzyme StySJI specificity protein [Salmonella enteric... lcl\|NC_016856.1_... - [gene=hsdS] [protein=type I restriction enzyme specificity protein] [protein_id=YP_005240863.1] [loc... gi\|205337035, gi... - gi\|205337035\|gb\|EDZ23799.1\| type I restriction enzyme StySJI specificity protein [Salmonella enteric... gi\|194449649, gi... - gi\|194449649\|ref\|YP_002048547.1\| type I restriction enzyme StySJI specificity protein [Salmonella en...	241.0	[0..1]	[464..1]
gi\|115255517, gi... - gi\|116250869\|ref\|YP_766707.1\| putative type I restriction enzyme specificity subunit [Rhizobium legu...	241.0	[0..6]	[464..4]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGKLPEGW VIAPVSTVTT LIRGVTYKKE QAINYLKDDY LPLIRANNIQ NGKFDTTDLV  60
   61 FVPKNLVKES QKISPEDIVI AMSSGSKSVV GKSAHQHLPF ECSFGAFCGV LRPEKLIFSG 120
  121 FIAHFTKSSL YRNKISSLSA GANINNIKPA SFDLINIPIP PLAEQKIIAE KLDTLLAQVD 180
  181 STKARFEQIP QILKRFRQAV LGGAVNGKLT EKWRNFEPQH SVFKKLNFES ILTELRNGLS 240
  241 SKPNESGVGH PILRISSVRA GHVDQNDIRF LECSESELNR HKLQDGDLLF TRYNGSLEFV 300
  301 GVCGLLKKLQ HQNLLYPDKL IRARLTKDAL PEYIEIFFSS PSARNAMMNC VKTTSGQKGI 360
  361 SGKDIKSQVV LLPPVKEQAE IVRRVEQLFA YADTIEKQVN NALARVNNLT QSILAKAFRG 420
  421 ELTAQWRAEN PDLISGENSA AALLEKIKAE RAASGGKKAS RKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1yf2A
Description:	Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits