YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229841609, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229841609, gi....

Description	E-value	Query Range	Subject Range
gi\|62127365, gi\|... - gi\|62179732\|ref\|YP_216149.1\| hypothetical protein SC1162 [Salmonella enterica subsp. enterica serova... gi\|199603046, gi... - gi\|200390601\|ref\|ZP_03217212.1\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|197939860, gi... - gi\|198245344\|ref\|YP_002215926.1\| surface antigen domain protein [Salmonella enterica subsp. enterica... gi\|195630321, gi... - gi\|195874169\|ref\|ZP_02701011.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ...	4.0E-47	[1..179]	[1..179]
gi\|91071839, gi\|... - gi\|91210265\|ref\|YP_540251.1\| hypothetical protein UTI89_C1238 [Escherichia coli UTI89], gi\|91071839\|... gi\|226898114, gi... - gi\|237706904\|ref\|ZP_04537385.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	4.0E-47	[1..179]	[14..192]
gi\|26247253, gi\|... - gi\|26247253\|ref\|NP_753293.1\| hypothetical protein c1383 [Escherichia coli CFT073], gi\|26107654\|gb\|AA...	1.0E-46	[1..178]	[14..191]
gi\|110641286, gi... - gi\|110641286\|ref\|YP_669016.1\| hypothetical protein ECP_1102 [Escherichia coli 536], gi\|110342878\|gb\|... gi\|115512419, gi... - gi\|117623295\|ref\|YP_852208.1\| hypothetical protein APECO1_191 [Escherichia coli APEC O1], gi\|1155124... gi\|191173125, gi... - gi\|191173125\|ref\|ZP_03034658.1\| surface antigen domain protein [Escherichia coli F11], gi\|190906670\|... gi\|215264393, gi... - gi\|215486321\|ref\|YP_002328752.1\| hypothetical protein E2348C_1202 [Escherichia coli O127:H6 str. E23... gi\|218364760, gi... - gi\|218557991\|ref\|YP_002390904.1\| hypothetical protein ECS88_1124 [Escherichia coli S88], gi\|21836476... gi\|218426626, gi... - gi\|218689062\|ref\|YP_002397274.1\| hypothetical protein ECED1_1253 [Escherichia coli ED1a], gi\|2184266...	1.0E-46	[1..179]	[1..179]
gi\|224468809, gi... - gi\|224584282\|ref\|YP_002638080.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|213416613 - gi\|213416613\|ref\|ZP_03349757.1\| hypothetical protein Salmonentericaenterica_00973 [Salmonella enteri... gi\|205347231, gi... - gi\|205360760\|ref\|ZP_02686253.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|214003110 - gi\|214003110\|ref\|ZP_03413845.1\| hypothetical protein Salmonellentericaenterica_23601 [Salmonella ent... gi\|213622497 - gi\|213622497\|ref\|ZP_03375280.1\| hypothetical protein SentesTyp_35273 [Salmonella enterica subsp. ent... gi\|205321953, gi... - gi\|205357396\|ref\|ZP_02347377.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|204930700, gi... - gi\|204930700\|ref\|ZP_03221573.1\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|205360066, gi... - gi\|205360066\|ref\|ZP_02834315.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|205329778, gi... - gi\|205357742\|ref\|ZP_02573103.2\| surface antigen domain protein [Salmonella enterica subsp. enterica ... gi\|194456392, gi... - gi\|194470028\|ref\|ZP_03076012.1\| surface antigen domain protein [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=ycfJ] [protein=hypothetical protein] [protein_id=YP_005236969.1] [location=1254100..1254639] gi\|194447359, gi... - gi\|194447359\|ref\|YP_002045211.1\| hypothetical protein SeHA_C1326 [Salmonella enterica subsp. enteric... gi\|197248493, gi... - gi\|197248493\|ref\|YP_002146830.1\| surface antigen domain protein [Salmonella enterica subsp. enterica... gi\|194711255, gi... - gi\|194735753\|ref\|YP_002114217.1\| surface antigen domain protein [Salmonella enterica subsp. enterica... gi\|197288136, gi... - gi\|197288136\|gb\|EDY27523.1\| surface antigen domain protein [Salmonella enterica subsp. enterica sero... gi\|205332734, gi... - gi\|205332734\|gb\|EDZ19498.1\| surface antigen domain protein [Salmonella enterica subsp. enterica sero... gi\|194445937, gi... - gi\|194445937\|ref\|YP_002040466.1\| 17 kDa surface antigen [Salmonella enterica subsp. enterica serovar... gi\|205336785, gi... - gi\|205336785\|gb\|EDZ23549.1\| surface antigen domain protein [Salmonella enterica subsp. enterica sero... gi\|25325165, gi\|... - gi\|25325165\|pir\|\|AE0644 probable secreted protein STY1252 [imported] - Salmonella enterica subsp. en... gi\|16419729, gi\|... - gi\|16764567\|ref\|NP_460182.1\| hypothetical protein STM1212 [Salmonella typhimurium LT2], gi\|16419729\|... gi\|29137771, gi\|... - gi\|29142142\|ref\|NP_805484.1\| hypothetical protein t1708 [Salmonella enterica subsp. enterica serovar... gi\|16760087 - gi\|16760087\|ref\|NP_455704.1\| hypothetical protein STY1252 [Salmonella enterica subsp. enterica serov...	2.0E-46	[1..179]	[1..179]
gi\|15801227, gi\|... - gi\|15801227\|ref\|NP_287244.1\| hypothetical protein Z1749 [Escherichia coli O157:H7 EDL933], gi\|125146... gi\|168783480, gi... - gi\|188999143\|gb\|EDU68129.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4076], g... gi\|13360952, gi\|... - gi\|15830742\|ref\|NP_309515.1\| hypothetical protein ECs1488 [Escherichia coli O157:H7], gi\|13360952\|db... gi\|189370397, gi... - gi\|189370397\|gb\|EDU88813.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189375512, gi... - gi\|189375512\|gb\|EDU93928.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC508], gi... gi\|187767896, gi... - gi\|187776319\|ref\|ZP_02801802.2\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4196... gi\|13360952, gi\|... - gi\|15830742\|ref\|NP_309515.1\| hypothetical protein ECs1488 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188014639, gi... - gi\|188014639\|gb\|EDU52761.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189365178, gi... - gi\|189365178\|gb\|EDU83594.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4501], g... gi\|208822790, gi... - gi\|208822790\|ref\|ZP_03263109.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4042... gi\|209398929, gi... - gi\|209398929\|ref\|YP_002269955.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC411... gi\|217328028, gi... - gi\|217328028\|ref\|ZP_03444110.1\| surface antigen domain protein [Escherichia coli O157:H7 str. TW1458... gi\|189402501, gi... - gi\|189402501\|ref\|ZP_02782832.2\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4401... gi\|189403587, gi... - gi\|189403587\|ref\|ZP_02796343.2\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4486... gi\|254591893, gi... - gi\|254792493\|ref\|YP_003077330.1\| hypothetical protein ECSP_1412 [Escherichia coli O157:H7 str. TW143... gi\|209773042, gi... - pir\|\|H90814 hypothetical protein ECs1488 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208727231, gi... - gi\|208807430\|ref\|ZP_03249767.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4206... gi\|208816174, gi... - gi\|208816174\|ref\|ZP_03257353.1\| surface antigen domain protein [Escherichia coli O157:H7 str. EC4045...	5.0E-46	[1..178]	[1..178]
YCFJ_ECOL6 - Uncharacterized protein YcfJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ycfJ ... gi\|218351375, gi... - gi\|218694643\|ref\|YP_002402310.1\| hypothetical protein EC55989_1222 [Escherichia coli 55989], gi\|2183... gi\|218431618, gi... - gi\|218704521\|ref\|YP_002412040.1\| hypothetical protein ECUMN_1288 [Escherichia coli UMN026], gi\|21843... gi\|194433686, gi... - gi\|194433686\|ref\|ZP_03065962.1\| surface antigen domain protein [Shigella dysenteriae 1012], gi\|19441... gi\|194439718, gi... - gi\|194439718\|ref\|ZP_03071787.1\| surface antigen domain protein [Escherichia coli 101-1], gi\|19442133... gi\|209911625, gi... - gi\|209918366\|ref\|YP_002292450.1\| hypothetical protein ECSE_1175 [Escherichia coli SE11], gi\|20991162... gi\|218553687, gi... - gi\|218553687\|ref\|YP_002386600.1\| hypothetical protein ECIAI1_1147 [Escherichia coli IAI1], gi\|218360... gi\|190901388, gi... - gi\|191168594\|ref\|ZP_03030378.1\| surface antigen domain protein [Escherichia coli B7A], gi\|190901388\|... gi\|193066291, gi... - gi\|193066291\|ref\|ZP_03047342.1\| surface antigen domain protein [Escherichia coli E22], gi\|192926063\|... gi\|89107956, gi\|... - gi\|89107956\|ref\|AP_001736.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|192955754, gi... - gi\|193070900\|ref\|ZP_03051831.1\| surface antigen domain protein [Escherichia coli E110019], gi\|192955... gi\|194412163, gi... - gi\|194429816\|ref\|ZP_03062330.1\| surface antigen domain protein [Escherichia coli B171], gi\|194412163... YCFJ_ECOL6 - Uncharacterized protein ycfJ OS=Escherichia coli O6 GN=ycfJ PE=4 SV=1 gi\|157066317, gi... - gi\|157160637\|ref\|YP_001457955.1\| hypothetical protein EcHS_A1233 [Escherichia coli HS], gi\|157066317... gi\|157080510, gi... - gi\|157158480\|ref\|YP_001462343.1\| hypothetical protein EcE24377A_1232 [Escherichia coli E24377A], gi\|... gi\|73855148, gi\|... - gi\|74311671\|ref\|YP_310090.1\| hypothetical protein SSON_1130 [Shigella sonnei Ss046], gi\|73855148\|gb\|... gi\|227886533, gi... - gi\|227886533\|ref\|ZP_04004338.1\| surface antigen domain protein [Escherichia coli 83972], gi\|22783673... YCFJ_ECOLI - Hypothetical protein ycfJ - Escherichia coli gi\|82777277, gi\|... - gi\|82777277\|ref\|YP_403626.1\| hypothetical protein SDY_2040 [Shigella dysenteriae Sd197], gi\|81241425... gi\|238862965, gi... - gi\|238900364\|ref\|YP_002926160.1\| hypothetical protein BWG_0958 [Escherichia coli BW2952], gi\|2388629... gi\|254161216, gi... - gi\|254161216\|ref\|YP_003044324.1\| hypothetical protein ECB_01106 [Escherichia coli B str. REL606], gi... gi\|82544422, gi\|... - gi\|82544422\|ref\|YP_408369.1\| hypothetical protein SBO_1951 [Shigella boydii Sb227], gi\|81245833\|gb\|A... gi\|251784639, gi... - gi\|251784639\|ref\|YP_002998943.1\| hypothetical protein B21_01114 [Escherichia coli BL21], gi\|24237691... gi\|56383376, gi\|... - gi\|56479825\|ref\|NP_707025.2\| hypothetical protein SF1114 [Shigella flexneri 2a str. 301], gi\|5638337... gi\|253773867, gi... - gi\|254288024\|ref\|YP_003053772.1\| hypothetical protein ECD_01106 [Escherichia coli BL21(DE3)], gi\|253... EG12444 - uncharacterized protein / Putative periplasmic protein, UmoD homolog gi\|169755423, gi... - gi\|170020495\|ref\|YP_001725449.1\| hypothetical protein EcolC_2491 [Escherichia coli ATCC 8739], gi\|16... gi\|169888596, gi... - gi\|170080761\|ref\|YP_001730081.1\| hypothetical protein ECDH10B_1182 [Escherichia coli str. K-12 subst... gi\|187732148, gi... - gi\|187732148\|ref\|YP_001880719.1\| surface antigen domain protein [Shigella boydii CDC 3083-94], gi\|18... gi\|188491427, gi... - gi\|188496228\|ref\|ZP_03003498.1\| surface antigen [Escherichia coli 53638], gi\|188491427\|gb\|EDU66530.1... YCFJ_SHIFL - Uncharacterized protein YcfJ OS=Shigella flexneri GN=ycfJ PE=4 SV=1 gi\|30040889, gi\|... - gi\|30062643\|ref\|NP_836814.1\| hypothetical protein S1194 [Shigella flexneri 2a str. 2457T], gi\|300408... EG12444 - uncharacterized protein / Putative periplasmic protein, UmoD homolog	5.0E-46	[1..178]	[1..178]
gi\|75239607 - gi\|75239607\|ref\|ZP_00723574.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli F11]	1.0E-43	[5..179]	[1..175]
gi\|213857237 - gi\|213857237\|ref\|ZP_03384208.1\| hypothetical protein SentesT_18825 [Salmonella enterica subsp. enter... gi\|213649267 - gi\|213649267\|ref\|ZP_03379320.1\| hypothetical protein SentesTy_19490 [Salmonella enterica subsp. ente... gi\|213425034 - gi\|213425034\|ref\|ZP_03357784.1\| hypothetical protein SentesTyphi_04635 [Salmonella enterica subsp. e... gi\|238910968 - gi\|238910968\|ref\|ZP_04654805.1\| hypothetical protein SentesTe_07512 [Salmonella enterica subsp. ente... gi\|56413803, gi\|... - gi\|56413803\|ref\|YP_150878.1\| hypothetical protein SPA1639 [Salmonella enterica subsp. enterica serov...	1.0E-43	[5..179]	[1..175]
gi\|75511401 - gi\|75511401\|ref\|ZP_00734084.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli 53638... gi\|75255625 - gi\|75255625\|ref\|ZP_00727404.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli E22] gi\|75234218 - gi\|75234218\|ref\|ZP_00718611.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli E1100... gi\|75228219 - gi\|75228219\|ref\|ZP_00714878.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli B7A] gi\|75208963 - gi\|75208963\|ref\|ZP_00709233.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli B171] gi\|75195293 - gi\|75195293\|ref\|ZP_00705363.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli HS] gi\|75190167 - gi\|75190167\|ref\|ZP_00703434.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli E2437... gi\|110614672, gi... - gi\|110805124\|ref\|YP_688644.1\| hypothetical protein SFV_1130 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|75175767 - gi\|75175767\|ref\|ZP_00695967.1\| COG3134: Predicted outer membrane lipoprotein [Shigella boydii BS512] gi\|83584877 - gi\|83584877\|ref\|ZP_00923535.1\| COG3134: Predicted outer membrane lipoprotein [Escherichia coli 101-1... gi\|83569567 - gi\|83569567\|ref\|ZP_00921019.1\| COG3134: Predicted outer membrane lipoprotein [Shigella dysenteriae 1...	4.0E-43	[5..178]	[1..174]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSMLAGVG IGIAAALGIA AVANIDVFSS APQYAKVLTA TPIKETIKTP RQECRNVTVT  60
   61 HRKPVQDENK IAGSVLGAVA GGVLGHQVGG GRGKDIATVA GALAGGYAGN RVQNNMQEND 120
  121 TYTTTQQRCQ TVYDKSQKTL GYDVTYKIGD QQGKIRMDRD PGMQIPIDKN GQLVLNNRA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits