YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|251812831, gi...
Organism:	Staphylococcus aureus subsp. aureus TCH70
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|251812831, gi....

Description	E-value	Query Range	Subject Range
RSMG_STAAN - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain N315) GN=rsmG PE=3 ... RSMG_STAAM - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)... RSMG_STAA2 - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain JH1) GN=rsmG PE=3 S... gi\|253316836 - gi\|253316836\|ref\|ZP_04840049.1\| 16S rRNA methyltransferase GidB [Staphylococcus aureus subsp. aureus... gi\|255007481 - gi\|255007481\|ref\|ZP_05146082.2\| 16S rRNA methyltransferase GidB [Staphylococcus aureus subsp. aureus... gi\|269204347\|ref... - 16S rRNA methyltransferase GidB [Staphylococcus aureus subsp. aureus ED98] gi\|25300027 - pir\|\|E90080 glucose inhibited division protein B [imported] - Staphylococcus aureus (strain N315) RSMG_STAA9 - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain JH9) GN=rsmG PE=3 S... RSMG_STAA1 - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) ...	198.0	[0..1]	[239..1]
gi\|221141511 - gi\|221141511\|ref\|ZP_03566004.1\| glucose-inhibited division protein B [Staphylococcus aureus subsp. a... RSMG_STAAR - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MRSA252) GN=rsmG PE... gi\|227556436, gi... - gi\|227556436\|ref\|ZP_03986483.1\| glucose-inhibited division protein B [Staphylococcus aureus subsp. a... gi\|221139517 - gi\|221139517\|ref\|ZP_03564316.1\| glucose-inhibited division protein B [Staphylococcus aureus subsp. a...	198.0	[0..1]	[239..1]
RSMG_STAAB - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain bovine RF122 / ET3-...	197.0	[0..1]	[239..1]
RSMG_STAHJ - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus haemolyticus (strain JCSC1435) GN=...	189.0	[0..1]	[238..1]
gi\|251805108, gi... - gi\|251811359\|ref\|ZP_04825832.1\| glucose-inhibited division protein B [Staphylococcus epidermidis BCM... GIDB_STAEP - (Q8CMN7) Methyltransferase gidB (EC 2.1.-.-) (Glucose inhibited division protein B) RSMG_STAES - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus epidermidis (strain ATCC 12228) GN...	188.0	[0..1]	[238..1]
RSMG_STAEQ - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus epidermidis (strain ATCC 35984 / R...	187.0	[0..1]	[238..1]
gi\|47093263, gi\|... - gi\|47093263\|ref\|ZP_00231034.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 4b ...	184.0	[0..1]	[236..1]
RSMG_ENTFA - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis (strain ATCC 700802 / V583)... RSMG_ENTFA, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis GN=rsmG PE=3 SV=1, Methyltr...	183.0	[0..1]	[236..1]
gi\|153184298, gi... - gi\|254899740\|ref\|ZP_05259664.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes J0161], gi\|1... gi\|254913057, gi... - gi\|254913057\|ref\|ZP_05263069.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes J2818], gi\|1... gi\|133731501, gi... - gi\|254937438\|ref\|ZP_05269135.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes F6900], gi\|1... GIDB_LISMO, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes GN=rsmG PE=3 SV=1, Methylt... gi\|224502785 - gi\|224502785\|ref\|ZP_03671092.1\| glucose-inhibited division protein B [Listeria monocytogenes FSL R2-... gi\|47095609, gi\|... - gi\|47095609\|ref\|ZP_00233217.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 1/2... RSMG_LISMO - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serovar 1/2a (strain ATCC ... gi\|255028091 - gi\|255028091\|ref\|ZP_05300042.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes LO28]	183.0	[0..1]	[236..1]
gi\|89100945, gi\|... - gi\|89100945\|ref\|ZP_01173792.1\| glucose-inhibited division protein B [Bacillus sp. NRRL B-14911], gi\|...	183.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVEWLAEQL KEHNIQLTET QKQQFQTYYR LLVEWNEKMN LTSITDEHDV YLKHFYDSIA  60
   61 PSFYFDFNQP ISICDVGAGA GFPSIPLKIM FPQLKVTIVD SLNKRIQFLN HLASELQLQD 120
  121 VSFIHDRAET FGKGVYRESY DVVTARAVAR LSVLSELCLP LVKKGGQFVA LKSSKGEEEL 180
  181 EEAKFAISVL GGNVTETHTF ELPEDAGERQ MFIIDKKRQT PKKYPRKPGT PNKTPLLEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1xdzA
Description:	Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	0.999964866871553	bayes_pls_golite062009
methyltransferase activity	0.558878917426836	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.557560946446304	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.0605581837493382	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: