YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238911397
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238911397.

Description	E-value	Query Range	Subject Range
gi\|1773143 - gi\|1773143\|gb\|AAB40215.1\| Hha protein [Escherichia coli]	2.0E-27	[1..72]	[68..139]
gi\|117622719, gi... - gi\|117622719\|ref\|YP_851632.1\| Hha protein [Escherichia coli APEC O1], gi\|115511843\|gb\|ABI99917.1\| Hh...	3.0E-27	[1..72]	[68..139]
gi\|47154986 - gi\|47154986\|emb\|CAE85185.1\| hypothetical protein [Escherichia coli] gi\|190907823, gi... - gi\|191171788\|ref\|ZP_03033334.1\| haemolysin expression modulating protein [Escherichia coli F11], gi\|... gi\|110344744, gi... - gi\|110643152\|ref\|YP_670882.1\| putative hemolysin expression modulating protein [Escherichia coli 536...	3.0E-26	[7..71]	[63..127]
gi\|26246473, gi\|... - gi\|26246473\|ref\|NP_752512.1\| hemolysin expression-modulating protein [Escherichia coli CFT073], gi\|2... gi\|91209533, gi\|... - gi\|91209533\|ref\|YP_539519.1\| hemolysin expression-modulating protein [Escherichia coli UTI89], gi\|91... gi\|24050637, gi\|... - ref\|NP_706353.1\| hha protein [Shigella flexneri 2a str. 301], gb\|AAN42060.1\| hha protein [Shigella ... gi\|170021152, gi... - gi\|170021152\|ref\|YP_001726106.1\| hemolysin expression-modulating protein [Escherichia coli ATCC 8739...	2.0E-25	[1..72]	[5..76]
gi\|187731539, gi... - gi\|75177595\|ref\|ZP_00697676.1\| hypothetical protein SboyB_01002558 [Shigella boydii BS512], gi\|18773... gi\|75189528 - gi\|75189528\|ref\|ZP_00702795.1\| hypothetical protein EcolE_01002813 [Escherichia coli E24377A] gi\|194432706, gi... - gi\|83570211\|ref\|ZP_00921657.1\| hypothetical protein Sdys1_01001496 [Shigella dysenteriae 1012], gi\|1... gi\|83587085, gi\|... - gi\|83587085\|ref\|ZP_00925715.1\| hypothetical protein Ecol1_01001828 [Escherichia coli 101-1], gi\|1944... HHA_ECOLI - Hemolysin expression-modulating protein - Escherichia coli gi\|20150561 - pdb\|1JW2\|A Chain A, Solution Structure Of Hemolysin Expression Modulating Protein Hha From Escherich... HHA_SHIFL - Hemolysin expression-modulating protein Hha OS=Shigella flexneri GN=hha PE=3 SV=1 gi\|30061960, gi\|... - gi\|30061960\|ref\|NP_836131.1\| hemolysin expression-modulating protein [Shigella flexneri 2a str. 2457... EG10439 - modulator of gene expression, with H-NS / Modulates hemolysin expression, in complex with H-NS; stim... HHA_ECO57 - Hemolysin expression-modulating protein Hha OS=Escherichia coli O157:H7 GN=hha PE=3 SV=1 HHA_ECOL6 - Hemolysin expression-modulating protein Hha OS=Escherichia coli O6 GN=hha PE=3 SV=1 EG10439 - modulator of gene expression, with H-NS / Modulates hemolysin expression, in complex with H-NS; stim... gi\|12513327, gi\|... - gi\|15800189\|ref\|NP_286201.1\| hemolysin expression-modulating protein [Escherichia coli O157:H7 EDL93... gi\|124499314, gi... - gi\|124530289\|ref\|ZP_01701008.1\| Haemolysin expression modulating family protein [Escherichia coli B]... gi\|217324962, gi... - gi\|217324962\|ref\|ZP_03441046.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|218359794, gi... - gi\|218553026\|ref\|YP_002385939.1\| hemolysin expression-modulating protein [Escherichia coli IAI1], gi... gi\|218425887, gi... - gi\|218688323\|ref\|YP_002396535.1\| hemolysin expression-modulating protein [Escherichia coli ED1a], gi... gi\|218698629, gi... - gi\|218698629\|ref\|YP_002406258.1\| hemolysin expression-modulating protein [Escherichia coli IAI39], g... gi\|218430840, gi... - gi\|218703743\|ref\|YP_002411262.1\| hemolysin expression-modulating protein [Escherichia coli UMN026], ... gi\|170683314, gi... - gi\|170683314\|ref\|YP_001742604.1\| haemolysin expression modulating protein [Escherichia coli SMS-3-5]... gi\|195936023 - gi\|195936023\|ref\|ZP_03081405.1\| Hha protein [Escherichia coli O157:H7 str. EC4024] gi\|208728571, gi... - gi\|208808770\|ref\|ZP_03251107.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|208815252, gi... - gi\|208815252\|ref\|ZP_03256431.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|208737472, gi... - gi\|208823279\|ref\|ZP_03263597.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|209400347, gi... - gi\|209400347\|ref\|YP_002269110.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 ... gi\|209917676, gi... - gi\|209917676\|ref\|YP_002291760.1\| hemolysin expression-modulating protein [Escherichia coli SE11], gi... gi\|215485540, gi... - gi\|215485540\|ref\|YP_002327971.1\| hemolysin expression-modulating protein [Escherichia coli O127:H6 s... gi\|227884528, gi... - gi\|227884528\|ref\|ZP_04002333.1\| hemolysin expression modulating protein Hha [Escherichia coli 83972]... gi\|237707544, gi... - gi\|237707544\|ref\|ZP_04538025.1\| hha protein [Escherichia sp. 3_2_53FAA], gi\|226898754\|gb\|EEH85013.1\|... gi\|251783969, gi... - gi\|251783969\|ref\|YP_002998273.1\| hypothetical protein B21_00416 [Escherichia coli BL21], gi\|24237624... gi\|254287333, gi... - gi\|254287333\|ref\|YP_003053081.1\| modulator of gene expression, with H-NS [Escherichia coli BL21(DE3)... gi\|253972430, gi... - gi\|254160529\|ref\|YP_003043637.1\| modulator of gene expression, with H-NS [Escherichia coli B str. RE... gi\|254791643, gi... - gi\|254791643\|ref\|YP_003076480.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 s... HHA_ECOL6 - Hemolysin expression-modulating protein Hha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|85674599, gi\|... - gi\|89107329\|ref\|AP_001109.1\| modulator of gene expression, with H-NS [Escherichia coli str. K-12 sub... gi\|168747864, gi... - gi\|188017700\|gb\|EDU55822.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|56479667, gi\|... - gi\|56479667\|ref\|NP_706353.2\| hemolysin expression-modulating protein [Shigella flexneri 2a str. 301]... gi\|189357980, gi... - gi\|189357980\|gb\|EDU76399.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|82775809, gi\|... - gi\|82775809\|ref\|YP_402156.1\| hemolysin expression-modulating protein [Shigella dysenteriae Sd197], g... gi\|168760385, gi... - gi\|189369164\|gb\|EDU87580.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|81244364, gi\|... - gi\|82542953\|ref\|YP_406900.1\| hemolysin expression-modulating protein [Shigella boydii Sb227], gi\|812... gi\|168768415, gi... - gi\|189362448\|gb\|EDU80867.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|187767541, gi... - gi\|187767541\|gb\|EDU31385.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|168778953, gi... - gi\|189002726\|gb\|EDU71712.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|189373478, gi... - gi\|189373478\|gb\|EDU91894.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|168798024, gi... - gi\|189379277\|gb\|EDU97693.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|75229379, gi\|... - gi\|75229379\|ref\|ZP_00715934.1\| hypothetical protein EcolB7_01002423 [Escherichia coli B7A], gi\|19116... gi\|190906059, gi... - gi\|75238212\|ref\|ZP_00722213.1\| hypothetical protein EcolF_01003537 [Escherichia coli F11], gi\|191173... gi\|157159986, gi... - gi\|75194680\|ref\|ZP_00704750.1\| hypothetical protein EcolH_01000459 [Escherichia coli HS], gi\|1571599... gi\|75209784, gi\|... - gi\|75209784\|ref\|ZP_00709986.1\| hypothetical protein EcolB_01003082 [Escherichia coli B171], gi\|19442... gi\|188495333, gi... - gi\|75514583\|ref\|ZP_00736838.1\| hypothetical protein Ecol5_01001357 [Escherichia coli 53638], gi\|1884... gi\|15829767, gi\|... - gi\|15829767\|ref\|NP_308540.1\| hemolysin expression-modulating protein [Escherichia coli O157:H7 str. ... gi\|73854516, gi\|... - gi\|74311039\|ref\|YP_309458.1\| hemolysin expression-modulating protein [Shigella sonnei Ss046], gi\|738... gi\|110342313, gi... - gi\|110640721\|ref\|YP_668449.1\| hemolysin expression-modulating protein [Escherichia coli 536], gi\|110... gi\|192959003, gi... - gi\|75239044\|ref\|ZP_00723026.1\| hypothetical protein EcolE1_01000811 [Escherichia coli E110019], gi\|1... gi\|75257895, gi\|... - gi\|75257895\|ref\|ZP_00729373.1\| hypothetical protein EcolE2_01002378 [Escherichia coli E22], gi\|19306...	3.0E-25	[1..72]	[1..72]
gi\|253782325, gi... - gi\|253990875\|ref\|YP_003042231.1\| Haemolysin expression modulating protein [Photorhabdus asymbiotica]... gi\|36787149, gi\|... - gi\|37527713\|ref\|NP_931058.1\| hemolysin expression-modulating protein [Photorhabdus luminescens subsp...	1.0E-24	[6..72]	[1..67]
gi\|38639695, gi\|... - gi\|38639695\|ref\|NP_943464.1\| hemolysin expression-modulating protein [Klebsiella pneumoniae], gi\|380...	7.0E-24	[6..72]	[1..67]
YMOA_YERPE - Modulating protein YmoA OS=Yersinia pestis GN=ymoA PE=1 SV=1 gi\|62825110 - gi\|62825110\|gb\|AAY16116.1\| YmoA [Yersinia intermedia] gi\|62825108 - gi\|62825108\|gb\|AAY16115.1\| YmoA [Yersinia frederiksenii] gi\|77974283 - gi\|77974283\|ref\|ZP_00829824.1\| hypothetical protein YfreA_01001863 [Yersinia frederiksenii ATCC 3364... gi\|162351064, gi... - gi\|77635244\|ref\|ZP_00797331.1\| hypothetical protein YpesA_01001409 [Yersinia pestis Angola], gi\|1624... gi\|152960419, gi... - gi\|77631946\|ref\|ZP_00794532.1\| hypothetical protein YpseI_01003336 [Yersinia pseudotuberculosis IP 3... gi\|165989985, gi... - gi\|166010985\|ref\|ZP_02231883.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|165927647, gi... - gi\|165927647\|ref\|ZP_02223479.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|167399288, gi... - gi\|167399288\|ref\|ZP_02304812.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|166205704, gi... - gi\|166212917\|ref\|ZP_02238952.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|167423614, gi... - gi\|167423614\|ref\|ZP_02315367.1\| hemolysin expression modulating protein [Yersinia pestis biovar Medi... gi\|166960492, gi... - gi\|167421573\|ref\|ZP_02313326.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|21957794, gi\|... - gi\|22124953\|ref\|NP_668376.1\| hemolysin expression-modulating protein [Yersinia pestis KIM], gi\|21957... gi\|51595328, gi\|... - gi\|51595328\|ref\|YP_069519.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosis IP... gi\|45440642, gi\|... - gi\|45440642\|ref\|NP_992181.1\| hemolysin expression-modulating protein [Yersinia pestis biovar Microtu... gi\|149291429, gi... - gi\|149365016\|ref\|ZP_01887051.1\| modulating protein YmoA (histone-like protein) [Yersinia pestis CA88... YMOA_YEREN - Modulating protein YmoA OS=Yersinia enterocolitica GN=ymoA PE=3 SV=1 gi\|145211728, gi... - gi\|145600032\|ref\|YP_001164108.1\| hemolysin expression-modulating protein [Yersinia pestis Pestoides ... gi\|15981076, gi\|... - gi\|218930168\|ref\|YP_002348043.1\| hemolysin expression-modulating protein [Yersinia pestis CO92], gi\|... gi\|169751965, gi... - gi\|170025431\|ref\|YP_001721936.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosi... gi\|167470956 - gi\|167470956\|ref\|ZP_02335660.1\| haemolysin expression modulating protein [Yersinia pestis FV-1] gi\|186894346, gi... - gi\|186894346\|ref\|YP_001871458.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosi... gi\|108808624, gi... - gi\|108808624\|ref\|YP_652540.1\| hemolysin expression-modulating protein [Yersinia pestis Antiqua], gi\|... gi\|108774765, gi... - gi\|229901348\|ref\|ZP_04516470.1\| hemolysin expression modulating protein [Yersinia pestis Nepal516], ... gi\|229695106, gi... - gi\|229838740\|ref\|ZP_04458899.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|229896107, gi... - gi\|229896107\|ref\|ZP_04511277.1\| hemolysin expression modulating protein [Yersinia pestis Pestoides A... Q66DR5\|Q66DR5_YERPS - Hemolysin expression modulating protein - Yersinia pseudotuberculosis gi\|229899308, gi... - gi\|229899308\|ref\|ZP_04514451.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|89102020, gi\|... - gi\|89102020\|ref\|ZP_01174690.1\| hypothetical protein Ypesb_01003933 [Yersinia pestis biovar Orientali... gi\|238759242, gi... - gi\|238759242\|ref\|ZP_04620409.1\| Hemolysin expression-modulating protein [Yersinia aldovae ATCC 35236... gi\|238783590, gi... - gi\|238783590\|ref\|ZP_04627611.1\| Hemolysin expression-modulating protein [Yersinia bercovieri ATCC 43... gi\|238729068, gi... - gi\|238791452\|ref\|ZP_04635090.1\| Hemolysin expression-modulating protein [Yersinia intermedia ATCC 29... gi\|238795523, gi... - gi\|238795523\|ref\|ZP_04639038.1\| Hemolysin expression-modulating protein [Yersinia mollaretii ATCC 43... gi\|123443323, gi... - gi\|123443323\|ref\|YP_001007297.1\| hemolysin expression-modulating protein [Yersinia enterocolitica su...	1.0E-23	[6..72]	[1..67]
gi\|75241217 - gi\|75241217\|ref\|ZP_00725079.1\| hypothetical protein EcolF_01001780 [Escherichia coli F11]	2.0E-23	[7..71]	[5..69]

Back

Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKPLTKTD YLMRLRRCQT IDTLERVIEK NKYELSDNEL AVFYSAADHR LAELTMNKLY  60
   61 DKIPSSVWKF IR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1jw2A
Description:	Hemolysin expression modulating protein HHA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits