YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229513905, gi...
Organism:	Vibrio cholerae TMA 21
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229513905, gi....

Description	E-value	Query Range	Subject Range
Y1856_VIBVU, YI5... - (Q8DBG4) Hypothetical UPF0325 protein VV11856, UPF0325 protein VV1_1856 OS=Vibrio vulnificus GN=VV1_... Y2560_VIBVY - UPF0325 protein VV2560 OS=Vibrio vulnificus (strain YJ016) GN=VV2560 PE=3 SV=1 Y1856_VIBVU - UPF0325 protein VV1_1856 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1856 PE=3 SV=1	214.0	[0..11]	[136..1]
Y2264_VIBCH - UPF0325 protein VC_2264 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|75827552 - gi\|75827552\|ref\|ZP_00756987.1\| hypothetical protein VchoO_01001717 [Vibrio cholerae O395] gi\|75828881, gi\|... - gi\|75828881\|ref\|ZP_00758213.1\| hypothetical protein VchoM_01003121 [Vibrio cholerae MO10], gi\|116187... gi\|75814840 - gi\|75814840\|ref\|ZP_00745385.1\| hypothetical protein VchoV_01002460 [Vibrio cholerae V52] gi\|116215553, gi... - gi\|75822266\|ref\|ZP_00751925.1\| hypothetical protein VchoR_01002489 [Vibrio cholerae RC385], gi\|11621... gi\|229332509, gi... - gi\|229528735\|ref\|ZP_04418125.1\| chromosome segregation ATPase [Vibrio cholerae 12129(1)], gi\|2293325... Y2264_VIBCH, YM6... - (Q9KPU8) Hypothetical UPF0325 protein VC2264, UPF0325 protein VC_2264 OS=Vibrio cholerae GN=VC_2264 ...	213.0	[0..11]	[137..1]
Y2321_VIBPA - UPF0325 protein VP2321 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP2321 PE=... Y2321_VIBPA, YN2... - (Q87MD5) Hypothetical UPF0325 protein VP2321, UPF0325 protein VP2321 OS=Vibrio parahaemolyticus GN=V... gi\|153840387, gi... - gi\|153840387\|ref\|ZP_01993054.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	213.0	[0..11]	[136..1]
gi\|165939851, gi... - gi\|89105130\|ref\|ZP_01177655.1\| COG1196: Chromosome segregation ATPases [Yersinia pestis biovar Orien... Y514_YERPA - UPF0325 protein YPA_0514 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0514 PE=3 SV=1 Y3439_YERPG - UPF0325 protein YpAngola_A3439 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3439 PE=3... Y2962_YERPN - UPF0325 protein YPN_2962 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2962 PE=3 SV=1 Y1009_YERP3 - UPF0325 protein YpsIP31758_1009 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|45442579, gi\|... - gi\|45442579\|ref\|NP_994118.1\| hypothetical protein YP_2811 [Yersinia pestis biovar Microtus str. 9100... gi\|22127017, gi\|... - gi\|22127017\|ref\|NP_670440.1\| hypothetical protein y3141 [Yersinia pestis KIM], gi\|21960064\|gb\|AAM866... gi\|115346819, gi... - gi\|218928208\|ref\|YP_002346083.1\| hypothetical protein YPO1040 [Yersinia pestis CO92], gi\|16121340\|re... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3007 PE=3... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis GN=YPTB3007 PE=3 SV=1 gi\|149366959, gi... - gi\|149366959\|ref\|ZP_01888992.1\| hypothetical protein YPE_2223 [Yersinia pestis CA88-4125], gi\|149290... Y1673_YERPP - UPF0325 protein YPDSF_1673 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1673 PE=3 SV=1 gi\|165920982, gi... - gi\|165927086\|ref\|ZP_02222918.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166207410, gi... - gi\|166211639\|ref\|ZP_02237674.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011905, gi... - gi\|166011905\|ref\|ZP_02232803.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419810, gi... - gi\|167419810\|ref\|ZP_02311563.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167400075, gi... - gi\|167400075\|ref\|ZP_02305593.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167468858 - gi\|167468858\|ref\|ZP_02333562.1\| hypothetical protein YpesF_13399 [Yersinia pestis FV-1] gi\|167425350, gi... - gi\|167425350\|ref\|ZP_02317103.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229837747, gi... - gi\|229837747\|ref\|ZP_04457907.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229704124\|gb\|EEO... gi\|229697335, gi... - gi\|229840969\|ref\|ZP_04461128.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229843070, gi... - gi\|229843070\|ref\|ZP_04463220.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1040_YERPE - UPF0325 protein YPO1040/y3141/YP_2811 OS=Yersinia pestis GN=YPO1040 PE=3 SV=1 Y3127_YERPB - UPF0325 protein YPTS_3127 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3127 PE=... Y1062_YERPY - UPF0325 protein YPK_1062 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1062 PE=3...	212.0	[0..11]	[136..1]
gi\|238784875, gi... - gi\|77957685\|ref\|ZP_00821734.1\| COG1196: Chromosome segregation ATPases [Yersinia bercovieri ATCC 439... gi\|77963179 - gi\|77963179\|ref\|ZP_00826991.1\| COG1196: Chromosome segregation ATPases [Yersinia mollaretii ATCC 439...	212.0	[0..11]	[136..1]
gi\|77972706, gi\|... - gi\|77972706\|ref\|ZP_00828265.1\| COG1196: Chromosome segregation ATPases [Yersinia frederiksenii ATCC ...	212.0	[0..11]	[136..1]
gi\|77977752, gi\|... - gi\|77977752\|ref\|ZP_00833193.1\| COG1196: Chromosome segregation ATPases [Yersinia intermedia ATCC 299...	208.0	[0..11]	[136..1]
gi\|116183485, gi... - gi\|75853969\|ref\|ZP_00761700.1\| COG1196: Chromosome segregation ATPases [Vibrio sp. Ex25], gi\|1161834...	208.0	[0..11]	[136..1]
gi\|91223470, gi\|... - gi\|91223470\|ref\|ZP_01258735.1\| hypothetical protein V12G01_22428 [Vibrio alginolyticus 12G01], gi\|91...	208.0	[0..11]	[136..1]
YAEH_SALPA - UPF0325 protein YaeH OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yaeH PE=3 SV=1 YAEH_SALCH - UPF0325 protein YaeH OS=Salmonella choleraesuis (strain SC-B67) GN=yaeH PE=3 SV=1 gi\|214000845 - gi\|214000845\|ref\|ZP_03411580.1\| hypothetical protein Salmonellentericaenterica_09811 [Salmonella ent... gi\|213647545 - gi\|213647545\|ref\|ZP_03377598.1\| hypothetical protein SentesTy_09807 [Salmonella enterica subsp. ente... gi\|213609530 - gi\|213609530\|ref\|ZP_03369356.1\| hypothetical protein SentesTyp_02918 [Salmonella enterica subsp. ent... gi\|213975349 - gi\|213975349\|ref\|ZP_03402608.1\| hypothetical protein Salmonellaentericaenterica_12618 [Salmonella en... gi\|213852251 - gi\|213852251\|ref\|ZP_03381783.1\| hypothetical protein SentesT_04837 [Salmonella enterica subsp. enter... YAEH_SALEP - UPF0325 protein YaeH OS=Salmonella enteritidis PT4 (strain P125109) GN=yaeH PE=3 SV=1 YAEH_SALG2 - UPF0325 protein YaeH OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yaeH PE=3 SV=1 YAEH_SALTY - UPF0325 protein yaeH OS=Salmonella typhimurium GN=yaeH PE=3 SV=1 YAEH_SALPB - UPF0325 protein yaeH OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yaeH PE=3 SV=1 gi\|213582935 - gi\|213582935\|ref\|ZP_03364761.1\| hypothetical protein SentesTyph_17678 [Salmonella enterica subsp. en... YAEH_SALCH - UPF0325 protein yaeH OS=Salmonella choleraesuis GN=yaeH PE=3 SV=1 gi\|213425937 - gi\|213425937\|ref\|ZP_03358687.1\| hypothetical protein SentesTyphi_09984 [Salmonella enterica subsp. e... YAEH_SALTY - UPF0325 protein yaeH OS=Salmonella typhimurium GN=yaeH PE=3 SV=1 YAEH_SALTI - UPF0325 protein yaeH OS=Salmonella typhi GN=yaeH PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yaeH] [protein=hypothetical protein] [protein_id=YP_005235882.1] [location=complement(248022..... YAEH_SALPB - UPF0325 protein YaeH OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yaeH PE=3 SV=1 gi\|16759202 - gi\|16759202\|ref\|NP_454819.1\| hypothetical protein STY0233 [Salmonella enterica subsp. enterica serov... YAEH_SALTY - UPF0325 protein YaeH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yaeH PE=3 SV... gi\|205331459, gi... - gi\|205331459\|gb\|EDZ18223.1\| protein YaeH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|29136376, gi\|... - gi\|29140752\|ref\|NP_804094.1\| hypothetical protein t0212 [Salmonella enterica subsp. enterica serovar... gi\|167550584, gi... - gi\|205324401\|gb\|EDZ12240.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Saintpaul str.... YAEH_SALCH - UPF0325 protein yaeH OS=Salmonella choleraesuis GN=yaeH PE=3 SV=1 YAEH_SALPA - UPF0325 protein yaeH OS=Salmonella paratyphi A GN=yaeH PE=3 SV=1 YAEH_SALDC - UPF0325 protein YaeH OS=Salmonella dublin (strain CT_02021853) GN=yaeH PE=3 SV=1 YAEH_SALPK - UPF0325 protein YaeH OS=Salmonella paratyphi A (strain AKU_12601) GN=yaeH PE=3 SV=1 gi\|204927233, gi... - gi\|204927233\|ref\|ZP_03218435.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Javiana st... gi\|199604908, gi... - gi\|200387810\|ref\|ZP_03214422.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Virchow st... YAEH_SALSV - UPF0325 protein YaeH OS=Salmonella schwarzengrund (strain CVM19633) GN=yaeH PE=3 SV=1 gi\|194457314, gi... - gi\|194470950\|ref\|ZP_03076934.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|197262542, gi... - gi\|197262542\|ref\|ZP_03162616.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|238911277 - gi\|238911277\|ref\|ZP_04655114.1\| hypothetical protein SentesTe_09095 [Salmonella enterica subsp. ente... YAEH_SALA4 - UPF0325 protein YaeH OS=Salmonella agona (strain SL483) GN=yaeH PE=3 SV=1 gi\|168820783, gi... - gi\|205342409\|gb\|EDZ29173.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|195632708, gi... - gi\|195632708\|gb\|EDX51162.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Newport str. S... YAEH_SALHS - UPF0325 protein YaeH OS=Salmonella heidelberg (strain SL476) GN=yaeH PE=3 SV=1 YAEH_SALNS - UPF0325 protein YaeH OS=Salmonella newport (strain SL254) GN=yaeH PE=3 SV=1 gi\|197291960, gi... - gi\|197291960\|gb\|EDY31310.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Schwarzengrund... YAEH_SALTI - UPF0325 protein YaeH OS=Salmonella typhi GN=yaeH PE=3 SV=1 gi\|168230517, gi... - gi\|205335072\|gb\|EDZ21836.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|205347450, gi... - gi\|205347450\|gb\|EDZ34081.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|205336159, gi... - gi\|205336159\|gb\|EDZ22923.1\| protein YaeH [Salmonella enterica subsp. enterica serovar Heidelberg str...	206.0	[0..11]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVILTKRLP MFPHLVGLGI NEPTQIERYS LRQEAHKDVL KIYFKKQKGE LFAKSVKFKY  60
   61 PRQIKNVLVD SGSHQYKEVT EINRNLTLVI DELNKITKPE VMGEVDVKQK ILNDLRHLEK 120
  121 VVASKIAEIE ADLQKLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits