YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254716167
Organism:	Brucella ceti M13/05/1
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254716167.

Description	E-value	Query Range	Subject Range
RL20_CHESB - 50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1	182.0	[0..1]	[133..1]
RL20_BARBK - 50S ribosomal protein L20 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplT PE=3 SV=1	178.0	[0..1]	[134..1]
RL20_RHIL3 - 50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplT PE=3 SV=1	178.0	[0..1]	[134..1]
gi\|25295362, gi\|... - gi\|25295363\|pir\|\|AH2607 50S ribosomal protein L20 [imported] - Agrobacterium tumefaciens (strain C58... RL20_AGRFC - 50S ribosomal protein L20 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplT PE=3 SV=1	175.0	[0..1]	[134..1]
RL20_BARHE - 50S ribosomal protein L20 OS=Bartonella henselae GN=rplT PE=3 SV=1 RL20_BARHE - 50S ribosomal protein L20 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rplT...	174.0	[0..1]	[134..1]
RL20_SINMW - 50S ribosomal protein L20 OS=Sinorhizobium medicae (strain WSM419) GN=rplT PE=3 SV=1	172.0	[0..1]	[134..1]
RL20_RHIME - 50S ribosomal protein L20 OS=Rhizobium meliloti GN=rplT PE=3 SV=1 RL20_RHIME - 50S ribosomal protein L20 OS=Rhizobium meliloti (strain 1021) GN=rplT PE=3 SV=1	171.0	[0..1]	[134..1]
gi\|114706183, gi... - gi\|114706183\|ref\|ZP_01439086.1\| 50S ribosomal protein L20 [Fulvimarina pelagi HTCC2506], gi\|11453902...	171.0	[0..1]	[133..1]
RL20_BARQU - 50S ribosomal protein L20 OS=Bartonella quintana GN=rplT PE=3 SV=1 RL20_BARQU - 50S ribosomal protein L20 OS=Bartonella quintana (strain Toulouse) GN=rplT PE=3 SV=1	170.0	[0..1]	[134..1]
sp\|A0L4J9\|RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT... RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT...	169.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVKRGVTA HAKHKKVLDQ AAGFRGRRKN TIRTAKAAVD RSKQYAYRDR KNRKRSFRAL  60
   61 WIQRINAAVR EQGLTYGRFI DGLAKAGIEI DRKVLSDIAI HEPEAFAALV ASAKKALEYL 120
  121 KNTSMPNAFE GAVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1vs6Q
Description:	No description for 1vs6Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.97474791978241	bayes_pls_golite062009
structural molecule activity	9.40020164128852	bayes_pls_golite062009
binding	1.3135072239079	bayes_pls_golite062009
nucleic acid binding	0.517171097292651	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: