YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|225592569, gi...
Organism:	Wolbachia sp. wRi
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225592569, gi....

Description	E-value	Query Range	Subject Range
gi\|115365114, gi... - gi\|115377899\|ref\|ZP_01465085.1\| FeS cluster assembly scaffold IscU [Stigmatella aurantiaca DW4/3-1],...	197.0	[0..1]	[126..1]
gi\|126638539, gi... - gi\|78369006\|ref\|ZP_00839185.1\| FeS cluster assembly scaffold IscU [Shewanella sp. PV-4], gi\|78358967...	197.0	[0..1]	[126..1]
gi\|240013962 - gi\|240013962\|ref\|ZP_04720875.1\| scaffold protein [Neisseria gonorrhoeae DGI18] gi\|240016404 - gi\|240016404\|ref\|ZP_04722944.1\| scaffold protein [Neisseria gonorrhoeae FA6140] gi\|239999130 - gi\|239999130\|ref\|ZP_04719054.1\| scaffold protein [Neisseria gonorrhoeae 35/02] gi\|240115865 - gi\|240115865\|ref\|ZP_04729927.1\| scaffold protein [Neisseria gonorrhoeae PID18] gi\|240118163 - gi\|240118163\|ref\|ZP_04732225.1\| scaffold protein [Neisseria gonorrhoeae PID1] gi\|240080523 - gi\|240080523\|ref\|ZP_04725066.1\| scaffold protein [Neisseria gonorrhoeae FA19] gi\|240113109 - gi\|240113109\|ref\|ZP_04727599.1\| scaffold protein [Neisseria gonorrhoeae MS11] gi\|240125902 - gi\|240125902\|ref\|ZP_04738788.1\| scaffold protein [Neisseria gonorrhoeae SK-92-679] gi\|240128414 - gi\|240128414\|ref\|ZP_04741075.1\| scaffold protein [Neisseria gonorrhoeae SK-93-1035] gi\|240121531 - gi\|240121531\|ref\|ZP_04734493.1\| scaffold protein [Neisseria gonorrhoeae PID24-1] gi\|240123711 - gi\|240123711\|ref\|ZP_04736667.1\| scaffold protein [Neisseria gonorrhoeae PID332] gi\|254669832 - gi\|254669832\|emb\|CBA04214.1\| NifU-like protein [Neisseria meningitidis alpha153] gi\|254493906, gi... - gi\|254493906\|ref\|ZP_05107077.1\| nitrogen fixation protein nifU [Neisseria gonorrhoeae 1291], gi\|2265... gi\|254805176, gi... - gi\|254805176\|ref\|YP_003083397.1\| putative NifU-like protein [Neisseria meningitidis], gi\|254668718\|e... gi\|59801061, gi\|... - gi\|59801061\|ref\|YP_207773.1\| scaffold protein [Neisseria gonorrhoeae FA 1090], gi\|59717956\|gb\|AAW893... gi\|161595807, gi... - gi\|161870254\|ref\|YP_001599424.1\| scaffold protein [Neisseria meningitidis 053442], gi\|161595807\|gb\|A... gi\|11256594 - pir\|\|G81852 iron-sulfur cofactor synthesis protein nifU homolog NMA1596 [similarity] - Neisseria men... gi\|224957017, gi... - gi\|225154711\|ref\|ZP_03723211.1\| hypothetical protein NEILACOT_02531 [Neisseria lactamica ATCC 23970]... gi\|7380237, gi\|1... - gi\|7380237\|emb\|CAB84823.1\| NifU-like protein [Neisseria meningitidis Z2491], gi\|218768397\|ref\|YP_002... gi\|121635086, gi... - gi\|121635086\|ref\|YP_975331.1\| scaffold protein [Neisseria meningitidis FAM18], gi\|120866792\|emb\|CAM1... gi\|193934133, gi... - gi\|194098843\|ref\|YP_002001906.1\| scaffold protein [Neisseria gonorrhoeae NCCP11945], gi\|193934133\|gb...	196.0	[0..1]	[127..1]
gi\|7413463, gi\|1... - gi\|7413463\|gb\|AAF62330.1\| nifU protein [Neisseria meningitidis MC58], gi\|15677243\|ref\|NP_274396.1\| s...	196.0	[0..1]	[127..1]
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	196.0	[0..1]	[125..1]
gi\|49077878 - gi\|49077878\|gb\|AAT49727.1\| PA3813 [synthetic construct]	196.0	[0..1]	[125..1]
gi\|11351414 - pir\|\|F83168 probable iron-binding protein IscU PA3813 [imported] - Pseudomonas aeruginosa (strain PA... gi\|194547702, gi... - gi\|84319377\|ref\|ZP_00967774.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Pseudomonas... gi\|94412415, gi\|... - gi\|94412415\|ref\|ZP_01292344.1\| hypothetical protein PaerP_01005780 [Pseudomonas aeruginosa PA7], gi\|... gi\|46164499, gi\|... - gi\|46164499\|ref\|ZP_00137233.2\| COG0822: NifU homolog involved in Fe-S cluster formation [Pseudomonas... gi\|254242504, gi... - gi\|84325542\|ref\|ZP_00973577.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Pseudomonas... gi\|107103333 - gi\|107103333\|ref\|ZP_01367251.1\| hypothetical protein PaerPA_01004402 [Pseudomonas aeruginosa PACS2] gi\|9949987, gi\|1... - gi\|9949987\|gb\|AAG07200.1\|AE004799_6 probable iron-binding protein IscU [Pseudomonas aeruginosa PAO1]... gi\|218770126, gi... - gi\|218889903\|ref\|YP_002438767.1\| scaffold protein [Pseudomonas aeruginosa LESB58], gi\|218770126\|emb\|...	195.0	[0..1]	[125..1]
gi\|108464265, gi... - gi\|108760385\|ref\|YP_633158.1\| scaffold protein [Myxococcus xanthus DK 1622], gi\|108464265\|gb\|ABF8945...	195.0	[0..1]	[125..1]
gi\|254222199, gi... - gi\|75822377\|ref\|ZP_00752015.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Vibrio chol... gi\|254225014, gi... - gi\|75818778\|ref\|ZP_00748902.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Vibrio chol... gi\|121591452, gi... - gi\|121591452\|ref\|ZP_01678727.1\| NifU family protein [Vibrio cholerae 2740-80], gi\|121546686\|gb\|EAX56... gi\|153216238, gi... - gi\|153216238\|ref\|ZP_01950338.1\| NifU family protein [Vibrio cholerae 1587], gi\|124114383\|gb\|EAY33203... gi\|153220663, gi... - gi\|153220663\|ref\|ZP_01951774.1\| NifU family protein [Vibrio cholerae MAK 757], gi\|124120227\|gb\|EAY38... gi\|124123899, gi... - gi\|153800610\|ref\|ZP_01955196.1\| NifU family protein [Vibrio cholerae MZO-3], gi\|124123899\|gb\|EAY4264... gi\|153817268, gi... - gi\|153817268\|ref\|ZP_01969935.1\| NifU family protein [Vibrio cholerae NCTC 8457], gi\|126512184\|gb\|EAZ... gi\|229350656, gi... - gi\|229510691\|ref\|ZP_04400170.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|254843591, gi... - gi\|75832007\|ref\|ZP_00761266.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Vibrio chol... gi\|227008816, gi... - gi\|227080928\|ref\|YP_002809479.1\| NifU-related protein [Vibrio cholerae M66-2], gi\|227008816\|gb\|ACP05... gi\|147674136, gi... - gi\|75826099\|ref\|ZP_00755534.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Vibrio chol... gi\|229505637, gi... - gi\|229505637\|ref\|ZP_04395147.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|229513112, gi... - gi\|229513112\|ref\|ZP_04402578.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|254285467, gi... - gi\|254285467\|ref\|ZP_04960431.1\| NifU family protein [Vibrio cholerae AM-19226], gi\|197752904\|ref\|YP_... gi\|229344528, gi... - gi\|229517813\|ref\|ZP_04407257.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|153829392, gi... - gi\|153829392\|ref\|ZP_01982059.1\| NifU family protein [Vibrio cholerae 623-39], gi\|148875112\|gb\|EDL732... gi\|229339791, gi... - gi\|229523428\|ref\|ZP_04412835.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|153824636, gi... - gi\|153824636\|ref\|ZP_01977303.1\| NifU family protein [Vibrio cholerae MZO-2], gi\|149741854\|gb\|EDM5588... gi\|229525395, gi... - gi\|229525395\|ref\|ZP_04414800.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|229333895, gi... - gi\|229530121\|ref\|ZP_04419511.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae ... gi\|229608655, gi... - gi\|229608655\|ref\|YP_002879303.1\| iron-sulfur cluster assembly scaffold protein IscU [Vibrio cholerae... gi\|15640768, gi\|... - gi\|9655194\|gb\|AAF93914.1\| NifU-related protein [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15... gi\|11355734 - pir\|\|H82285 iron-sulfur cofactor synthesis protein nifU homolog VC0749 [similarity] - Vibrio cholera...	195.0	[0..1]	[127..1]
gi\|1075072 - gi\|1075072\|pir\|\|C64064 iron-sulfur cofactor synthesis protein nifU homolog HI0377 [similarity] - Hae...	195.0	[0..1]	[125..26]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNEKILDH YENPRNVGSL DKNDPNVGTG LVGAPSCGDV MKLQIKVNDK GVIEDAKFKT  60
   61 FGCGSAIASS SLLTEMIKGR TISDVTQIKN TQIVEELSLP PVKIHCSVLA EDAIKAAIHD 120
  121 YQSKQKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: