YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254682638
Organism:	Bacillus anthracis str. CNEVA-9066
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254682638.

Description	E-value	Query Range	Subject Range
gi\|218542359, gi... - gi\|218896228\|ref\|YP_002444639.1\| negative regulator of competence MecA [Bacillus cereus G9842], gi\|2... gi\|74491260, gi\|... - gi\|75761252\|ref\|ZP_00741235.1\| Negative regulator of genetic competence mecA [Bacillus thuringiensis... gi\|228807959, gi... - gi\|228951674\|ref\|ZP_04113776.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar kurstaki str.... gi\|228899874, gi... - gi\|228899874\|ref\|ZP_04064119.1\| Adapter protein mecA 1 [Bacillus thuringiensis IBL 4222], gi\|2288597... gi\|228714267, gi... - gi\|229068849\|ref\|ZP_04202144.1\| Adapter protein mecA 1 [Bacillus cereus F65185], gi\|228714267\|gb\|EEL... gi\|228964240, gi... - gi\|228964240\|ref\|ZP_04125360.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar sotto str. T0... gi\|228594093, gi... - gi\|229189382\|ref\|ZP_04316401.1\| Adapter protein mecA 1 [Bacillus cereus ATCC 10876], gi\|228594093\|gb... gi\|228704804, gi... - gi\|229078488\|ref\|ZP_04211048.1\| Adapter protein mecA 1 [Bacillus cereus Rock4-2], gi\|228704804\|gb\|EE... gi\|206737077, gi... - gi\|206968157\|ref\|ZP_03229113.1\| negative regulator of competence MecA [Bacillus cereus AH1134], gi\|2...	2.0E-69	[1..227]	[1..227]
gi\|42736304, gi\|... - gi\|42780385\|ref\|NP_977632.1\| adaptor protein [Bacillus cereus ATCC 10987], gi\|42736304\|gb\|AAS40240.1...	3.0E-69	[1..227]	[1..227]
gi\|229149497, gi... - gi\|229149497\|ref\|ZP_04277732.1\| Adapter protein mecA 1 [Bacillus cereus m1550], gi\|228633970\|gb\|EEK9... gi\|228656839, gi... - gi\|229126602\|ref\|ZP_04255615.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-Cer4], gi\|228656839\|gb\|... MECA1_BACCR - Adapter protein MecA 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM... gi\|228639564, gi... - gi\|229143903\|ref\|ZP_04272321.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-ST24], gi\|228639564\|gb\|... gi\|228726281, gi... - gi\|229043040\|ref\|ZP_04190770.1\| Adapter protein mecA 1 [Bacillus cereus AH676], gi\|228726281\|gb\|EEL7... gi\|218235246, gi... - gi\|218235246\|ref\|YP_002365977.1\| negative regulator of competence MecA [Bacillus cereus B4264], gi\|2... gi\|229108754, gi... - gi\|229108754\|ref\|ZP_04238362.1\| Adapter protein mecA 1 [Bacillus cereus Rock1-15], gi\|228674693\|gb\|E...	3.0E-69	[1..227]	[1..227]
gi\|229120817, gi... - gi\|229120817\|ref\|ZP_04250059.1\| Adapter protein mecA 1 [Bacillus cereus 95/8201], gi\|228662477\|gb\|EE... gi\|228693084, gi... - gi\|229090238\|ref\|ZP_04221484.1\| Adapter protein mecA 1 [Bacillus cereus Rock3-42], gi\|228693084\|gb\|E... gi\|228944902, gi... - gi\|228944902\|ref\|ZP_04107264.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar monterrey BGS... gi\|228926332, gi... - gi\|228926332\|ref\|ZP_04089405.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar pondicheriens... gi\|49330765, gi\|... - gi\|49479209\|ref\|YP_035430.1\| adaptor protein [Bacillus thuringiensis serovar konkukian str. 97-27], ... gi\|218902391, gi... - gi\|218902391\|ref\|YP_002450225.1\| negative regulator of competence MecA [Bacillus cereus AH820], gi\|2... gi\|196031782, gi... - gi\|196037540\|ref\|ZP_03104851.1\| negative regulator of competence MecA [Bacillus cereus NVH0597-99], ... gi\|228913868, gi... - gi\|228913868\|ref\|ZP_04077493.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar pulsiensis BG...	6.0E-69	[1..227]	[1..227]
gi\|89200596, gi\|... - gi\|89200596\|ref\|ZP_01179348.1\| Negative regulator of genetic competence [Bacillus cereus subsp. cyto...	2.0E-68	[1..227]	[1..224]
gi\|228651358, gi... - gi\|229132090\|ref\|ZP_04260951.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-ST196], gi\|228651358\|gb... gi\|163939092, gi... - gi\|89204584\|ref\|ZP_01183161.1\| Negative regulator of genetic competence [Bacillus weihenstephanensis...	9.0E-67	[1..226]	[1..226]
gi\|47501614, gi\|... - gi\|47526466\|ref\|YP_017815.1\| adaptor protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|47501614\|... gi\|30255155, gi\|... - gi\|30261301\|ref\|NP_843678.1\| adaptor protein [Bacillus anthracis str. Ames], gi\|30255155\|gb\|AAP25164... gi\|47554944, gi\|... - gi\|47568396\|ref\|ZP_00239097.1\| negative regulator of competence mecA, putative [Bacillus cereus G924... gi\|222094919, gi... - gi\|222094919\|ref\|YP_002528979.1\| negative regulator of competence [Bacillus cereus Q1], gi\|221238977...	1.0E-64	[11..227]	[1..217]
MECA_BACPF - Adapter protein mecA OS=Bacillus pseudofirmus GN=mecA PE=3 SV=1 gi\|2952027 - gi\|2952027\|gb\|AAC05443.1\| MecA homolog [Bacillus firmus] MECA_BACPE - Adapter protein MecA OS=Bacillus pseudofirmus (strain OF4) GN=mecA PE=3 SV=1	2.0E-61	[1..224]	[1..215]
gi\|127633517, gi... - gi\|254831373\|ref\|ZP_05236028.1\| adaptor protein [Listeria monocytogenes 10403S], gi\|153197062\|ref\|ZP... gi\|153191725, gi... - gi\|254912751\|ref\|ZP_05262763.1\| adaptor protein [Listeria monocytogenes J2818], gi\|153191725\|ref\|ZP_... gi\|254826921, gi... - gi\|254826921\|ref\|ZP_05231608.1\| adaptor protein [Listeria monocytogenes FSL N3-165], gi\|153175455\|re... gi\|133732383, gi... - gi\|254937078\|ref\|ZP_05268775.1\| adaptor protein [Listeria monocytogenes F6900], gi\|153180208\|ref\|ZP_... gi\|254872659 - gi\|254872659\|ref\|ZP_05245369.1\| adaptor protein [Listeria monocytogenes FSL N1-017] MECA_LISMO - Adapter protein MecA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=mecA PE... gi\|224498936 - gi\|224498936\|ref\|ZP_03667285.1\| adaptor protein [Listeria monocytogenes Finland 1988] gi\|254899108 - gi\|254899108\|ref\|ZP_05259032.1\| adaptor protein [Listeria monocytogenes J0161] gi\|255024195 - gi\|255024195\|ref\|ZP_05296181.1\| adaptor protein [Listeria monocytogenes FSL J1-208] gi\|255029957 - gi\|255029957\|ref\|ZP_05301908.1\| adaptor protein [Listeria monocytogenes LO28] gi\|47095764, gi\|... - gi\|47095764\|ref\|ZP_00233370.1\| negative regulator of competence MecA [Listeria monocytogenes str. 1/... gi\|224501010 - gi\|224501010\|ref\|ZP_03669317.1\| adaptor protein [Listeria monocytogenes FSL R2-561] MECA_LISMO - Adapter protein mecA OS=Listeria monocytogenes GN=mecA PE=3 SV=1	8.0E-60	[1..223]	[1..217]
MECA1_BACSU - Adapter protein MecA 1 OS=Bacillus subtilis (strain 168) GN=mecA PE=1 SV=1 gi\|221322515 - gi\|221322515\|ref\|ZP_03603809.1\| adaptor protein [Bacillus subtilis subsp. subtilis str. SMY] MECA1_BACSU, MEA... - Adapter protein mecA 1 OS=Bacillus subtilis GN=mecA PE=1 SV=1, (P37958) Adapter protein mecA 1 gi\|221318241 - gi\|221318241\|ref\|ZP_03599535.1\| adaptor protein [Bacillus subtilis subsp. subtilis str. JH642] gi\|221313317 - gi\|221313317\|ref\|ZP_03595122.1\| adaptor protein [Bacillus subtilis subsp. subtilis str. NCIB 3610]	8.0E-60	[1..223]	[1..216]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIERINDHT MKFFITYIDI EDRGFNREEI WYDRERSEEL FWEMMDEARD HDDFFIDGPL  60
   61 WIQVQAVDKG IEVLVTKAEL SKDGQKLELP IGVDKIIDIP LDEGIESLFQ QELVEEVEEQ 120
  121 AGTNFNEDGT FGFLIKFNDF EDVISLSHRL IFEDIKDELY SFEDRYYVYV EFDEVL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [177-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDEEEIDRIL SIVLEYGEES TLTIHRVSEY GKQIVKEHAL ETIRNNFPAK T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.458	0.101	protein binding, bridging	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.594	0.076	protein binding, bridging	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.508	0.046	protein binding, bridging	c.55.4	Translational machinery components
View	Download	0.643	0.012	protein binding, bridging	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.507	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits