YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253972912, gi...
Organism:	Escherichia coli B str. REL606
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253972912, gi....

Description	E-value	Query Range	Subject Range
gi\|26107323, gi\|... - gi\|26246923\|ref\|NP_752963.1\| hypothetical protein c1034 [Escherichia coli CFT073], gi\|26107323\|gb\|AA... gi\|91210000, gi\|... - gi\|91210000\|ref\|YP_539986.1\| protein YcaC [Escherichia coli UTI89], gi\|91071574\|gb\|ABE06455.1\| prote... gi\|115512205, gi... - gi\|117623081\|ref\|YP_851994.1\| hypothetical protein APECO1_1192 [Escherichia coli APEC O1], gi\|115512... gi\|237707113, gi... - gi\|237707113\|ref\|ZP_04537594.1\| ycaC [Escherichia sp. 3_2_53FAA], gi\|226898323\|gb\|EEH84582.1\| ycaC [...	214.0	[0..1]	[208..34]
gi\|113530355, gi... - gi\|116695856\|ref\|YP_841432.1\| isochorismatase superfamily hydrolase [Ralstonia eutropha H16], gi\|113...	213.0	[0..1]	[208..1]
gi\|75210414, gi\|... - gi\|75210414\|ref\|ZP_00710570.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli B171], ... gi\|218557805, gi... - gi\|218557805\|ref\|YP_002390718.1\| putative hydrolase [Escherichia coli S88], gi\|218364574\|emb\|CAR0226... gi\|75229265, gi\|... - gi\|75229265\|ref\|ZP_00715830.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli B7A], g... gi\|218360251, gi... - gi\|218553483\|ref\|YP_002386396.1\| putative hydrolase [Escherichia coli IAI1], gi\|218360251\|emb\|CAQ978... gi\|218431423, gi... - gi\|218704326\|ref\|YP_002411845.1\| putative hydrolase [Escherichia coli UMN026], gi\|218431423\|emb\|CAR1... gi\|218426304, gi... - gi\|218688740\|ref\|YP_002396952.1\| putative hydrolase [Escherichia coli ED1a], gi\|218426304\|emb\|CAR071... gi\|193064683, gi... - gi\|75257388\|ref\|ZP_00728904.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli E22], g... gi\|74311455, gi\|... - gi\|74311455\|ref\|YP_309874.1\| hypothetical protein SSON_0898 [Shigella sonnei Ss046], gi\|73854932\|gb\|... gi\|75234420, gi\|... - gi\|75234420\|ref\|ZP_00718781.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli E110019... gi\|190907611, gi... - gi\|75240974\|ref\|ZP_00724863.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli F11], g... gi\|195939560 - gi\|195939560\|ref\|ZP_03084942.1\| hypothetical protein EscherichcoliO157_24640 [Escherichia coli O157:... gi\|170684157, gi... - gi\|170684157\|ref\|YP_001744273.1\| isochorismatase family protein [Escherichia coli SMS-3-5], gi\|17052... gi\|208816030, gi... - gi\|208816030\|ref\|ZP_03257209.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4045... gi\|208726840, gi... - gi\|208807039\|ref\|ZP_03249376.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4206... gi\|209397831, gi... - gi\|209397831\|ref\|YP_002269570.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC411... gi\|208822162, gi... - gi\|208822162\|ref\|ZP_03262481.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4042... gi\|217326559, gi... - gi\|217326559\|ref\|ZP_03442643.1\| isochorismatase family protein [Escherichia coli O157:H7 str. TW1458... gi\|209911405, gi... - gi\|209918146\|ref\|YP_002292230.1\| hypothetical protein ECSE_0955 [Escherichia coli SE11], gi\|20991140... gi\|13360441, gi\|... - gi\|15830236\|ref\|NP_309009.1\| hypothetical protein ECs0982 [Escherichia coli O157:H7], gi\|13360441\|db... gi\|209774980, gi... - pir\|\|F90751 hypothetical protein ECs0982 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254591497, gi... - gi\|254792097\|ref\|YP_003076934.1\| predicted hydrolase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|13360441, gi\|... - gi\|15830236\|ref\|NP_309009.1\| hypothetical protein ECs0982 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110641097, gi... - gi\|110641097\|ref\|YP_668827.1\| hypothetical protein ECP_0911 [Escherichia coli 536], gi\|110342689\|gb\|... gi\|168756988, gi... - gi\|189355933\|gb\|EDU74352.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188013958, gi... - gi\|188013958\|gb\|EDU52080.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189361179, gi... - gi\|189361179\|gb\|EDU79598.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189366818, gi... - gi\|189366818\|gb\|EDU85234.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168783807, gi... - gi\|188998893\|gb\|EDU67879.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168776252, gi... - gi\|187768339\|gb\|EDU32183.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189376427, gi... - gi\|189376427\|gb\|EDU94843.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168787325, gi... - gi\|189372668\|gb\|EDU91084.1\| isochorismatase family protein [Escherichia coli O157:H7 str. EC869], gi...	211.0	[0..1]	[208..1]
gi\|68345727, gi\|... - gi\|70731428\|ref\|YP_261169.1\| isochorismatase superfamily hydrolase [Pseudomonas fluorescens Pf-5], g...	210.0	[0..1]	[208..1]
gi\|75189937, gi\|... - gi\|75189937\|ref\|ZP_00703204.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli E24377A...	210.0	[0..1]	[208..1]
gi\|4558197, gi\|4... - gi\|4558197\|pdb\|1YAC\|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene Product From Esch...	208.0	[0..1]	[208..1]
gi\|95109066 - gi\|95109066\|emb\|CAK13762.1\| hydrolase; isochorismatase hydrolase family [Pseudomonas entomophila L48... gi\|104780079, gi... - gi\|95109066\|emb\|CAK13762.1\| hydrolase; isochorismatase hydrolase family [Pseudomonas entomophila L48...	208.0	[0..1]	[206..1]
gi\|115373906, gi... - gi\|115373906\|ref\|ZP_01461197.1\| protein YcaC [Stigmatella aurantiaca DW4/3-1], gi\|115369034\|gb\|EAU67...	208.0	[0..1]	[208..34]
gi\|25364822 - pir\|\|D85615 hypothetical protein ycaC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15800760, gi\|... - gi\|15800760\|ref\|NP_286774.1\| hypothetical protein Z1243 [Escherichia coli O157:H7 EDL933], gi\|125140...	207.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPYVRLDK NDAAVLLVDH QAGLLSLVRD IEPDKFKNNV LALGDLAKYF NLPTILTTSF  60
   61 ETGPNGPLVP ELKAQFPDTP YIARPGNINA WDNEDFVKAV KATGKKQLII AGVVTEVCVA 120
  121 FPALSAIEEG FDVFVVTDAS GTFNEITRHS AWDRLSQAGA QLMTWFGVAC ELHRDWRNDI 180
  181 EGLATLFSNH IPDYRNLMTS YDTLTKQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.09691
Match:	1yacA
Description:	YcaC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.992051062697807	bayes_pls_golite062009
hydrolase activity	0.281081579126823	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: