YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|237821711
Organism:	Streptococcus pneumoniae CCRI 1974M2
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|237821711.

Description	E-value	Query Range	Subject Range
GPDA_STRZJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain JJA) GN=gpsA PE=3 S... GPDA_STRR6 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) ... gi\|183574086, gi... - gi\|183574086\|gb\|EDT94614.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol... gi\|183576003, gi... - gi\|183576003\|gb\|EDT96531.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol... GPDA_STRPJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain... GPDA_STRP2 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae serotype 2 (strain D39 / NC... gi\|168489152, gi... - gi\|183572218\|gb\|EDT92746.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol... gi\|25283809 - pir\|\|C98109 glycerol-3-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.94) [imported] - Streptococcus pne... gi\|148992065, gi... - gi\|148992065\|ref\|ZP_01821839.1\| (NAD(P)+) glycerol-3-phosphate dehydrogenase [Streptococcus pneumoni...	255.0	[0..1]	[338..1]
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	255.0	[0..4]	[334..1]
GPDA_STRMU - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus mutans serotype c (strain ATCC 700610 ... GPDA_STRMU - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus mutans GN=gpsA PE=3 SV=1	255.0	[0..1]	[338..1]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	254.0	[0..4]	[334..1]
GPDA_STRP6 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M6 GN=gpsA PE=1 SV=1 GPDA_STRP6 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-...	251.0	[0..1]	[337..1]
GPDA_STRPM - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M28 GN=gpsA PE=3 SV=... GPDA_STRPM - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M28 (strain MGAS6180...	251.0	[0..1]	[337..1]
GPDA_STRP1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M1 GN=gpsA PE=3 SV=1 GPDA_STRP3 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M3 GN=gpsA PE=3 SV=1 GPDA_STRP8 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M18 GN=gpsA PE=3 SV=... GPDA_STRP8 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M18 (strain MGAS8232... GPDA_STRP3 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-... GPDA_STRPZ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M49 (strain NZ131) G... gi\|56807554 - gi\|56807554\|ref\|ZP_00365474.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Streptococcus pyogenes M... GPDA_STRPG - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M5 (strain Manfredo)... GPDA_STRPB - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M12 (strain MGAS2096... GPDA_STRPC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M12 (strain MGAS9429... GPDA_STRPF - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M4 (strain MGAS10750... GPDA_STRPY - (P58143) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) (NAD(P)H-dependent glycerol-3-ph... GPDA_STRPQ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN... gi\|15674414, gi\|... - gi\|15674414\|ref\|NP_268588.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus pyo...	251.0	[0..1]	[337..1]
gi\|77171655, gi\|... - gi\|77409741\|ref\|ZP_00786400.1\| glycerol-3-phosphate dehydrogenase (NAD [Streptococcus agalactiae COH...	251.0	[0..1]	[337..1]
GPDA_LEPBJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	250.0	[0..4]	[334..1]
GPDA_STRA1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus agalactiae serotype Ia (strain ATCC 27... GPDA_STRA1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus agalactiae serotype Ia GN=gpsA PE=3 SV... gi\|77174309, gi\|... - gi\|77407078\|ref\|ZP_00784081.1\| glycerol-3-phosphate dehydrogenase (NAD [Streptococcus agalactiae H36...	250.0	[0..1]	[337..1]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQTVAVLG PGSWGTALSQ VLNDNGHEVR IWGNLPEQIN EINTHHTNKH YFKDVVLDEN  60
   61 IIAYTDLAET LKDVDAILFV VPTKVTRLVA QQVAQTLDHK VIIMHASKGL EPDSHKRLST 120
  121 ILEEEIPEHL RSDIVVVSGP SHAEETIVRD LTLITAASKD LQTAQYVQKL FSNHYFRLYT 180
  181 NTDVIGVETA GALKNIIAVG AGALHGLGFG DNAKAAIIAR GLAEITRLGV ALGASPLTYS 240
  241 GLSGVGDLIV TGTSIHSRNW RAGDALGRGE SLADIEANMG MVIEGISTTR AAYELAQELG 300
  301 VYMPITQAIY QVIYHGTNIK DAIYDIMNNE FKAENEWS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1z82A
Description:	Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits