YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229355853, gi...
Organism:	Vibrio cholerae BX 330286
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229355853, gi....

Description	E-value	Query Range	Subject Range
tr\|D7HDH3\|D7HDH3... - Extracellular deoxyribonuclease OS=Vibrio cholerae RC385 GN=VCRC385_03262 PE=4 SV=1 gi\|116219747, gi... - gi\|75819174\|ref\|ZP_00749267.1\| COG2356: Endonuclease I [Vibrio cholerae V51], gi\|254226307\|ref\|ZP_04...	434.0	[0..1]	[231..1]
gi\|75815274, gi\|... - gi\|75815274\|ref\|ZP_00745792.1\| COG2356: Endonuclease I [Vibrio cholerae V52], gi\|121728587\|ref\|ZP_01... gi\|153802597, gi... - gi\|153802597\|ref\|ZP_01957183.1\| extracellular deoxyribonuclease [Vibrio cholerae MZO-3], gi\|12412186... tr\|A2PUW8\|A2PUW8... - Extracellular deoxyribonuclease OS=Vibrio cholerae MZO-3 GN=dns PE=4 SV=1 gi\|229332085, gi... - gi\|229530312\|ref\|ZP_04419700.1\| endonuclease I precursor [Vibrio cholerae 12129(1)], gi\|229332085\|gb... gi\|153828430, gi... - gi\|153828430\|ref\|ZP_01981097.1\| extracellular deoxyribonuclease [Vibrio cholerae 623-39], gi\|1488761...	434.0	[0..1]	[231..1]
gi\|82394542 - gi\|82394542\|gb\|ABB72360.1\| endonuclease I precursor [Vibrio cholerae] gi\|146317387, gi... - gi\|75825871\|ref\|ZP_00755306.1\| COG2356: Endonuclease I [Vibrio cholerae O395], gi\|227116873\|ref\|YP_0...	431.0	[0..1]	[231..1]
gi\|82394536 - gi\|82394536\|gb\|ABB72357.1\| endonuclease I precursor [Vibrio diabolicus]	419.0	[0..2]	[229..1]
gi\|116184480, gi... - gi\|75855130\|ref\|ZP_00762791.1\| COG2356: Endonuclease I [Vibrio sp. Ex25], gi\|254230222\|ref\|ZP_049236...	416.0	[0..2]	[229..1]
gi\|28807619, gi\|... - gi\|28899383\|ref\|NP_798988.1\| extracellular deoxyribonuclease precursor [Vibrio parahaemolyticus RIMD... gi\|28807619 - gi\|28807619\|dbj\|BAC60872.1\| extracellular deoxyribonuclease precursor [Vibrio parahaemolyticus RIMD ... gi\|153839190, gi... - gi\|153839190\|ref\|ZP_01991857.1\| endonuclease-1 [Vibrio parahaemolyticus AQ3810], gi\|149747292\|gb\|EDM...	416.0	[0..2]	[229..1]
gi\|155163 - gi\|155163\|gb\|AAA27516.1\| DNase precursor	416.0	[0..1]	[231..1]
gi\|27364904, gi\|... - gi\|27364904\|ref\|NP_760432.1\| endonuclease I [Vibrio vulnificus CMCP6], gi\|27361050\|gb\|AAO09959.1\|AE0...	408.0	[0..3]	[229..4]
gi\|37199800, gi\|... - gi\|37681050\|ref\|NP_935659.1\| endonuclease I [Vibrio vulnificus YJ016], gi\|37199800\|dbj\|BAC95630.1\| e...	406.0	[0..3]	[229..4]
gi\|82394532 - gi\|82394532\|gb\|ABB72355.1\| endonuclease I precursor [Vibrio coralliilyticus]	404.0	[0..4]	[229..7]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIFRFVTTL AASLPLLTFA APISFSHAKN EAVKIYRDHP VSFYCGCEIR WQGKKGIPDL  60
   61 ESCGYQVRKN ENRASRIEWE HVVPAWQFGH QLQCWQQGGR KNCTRTSPEF NQMEADLHNL 120
  121 TPAIGEVNGD RSNFSFSQWN GVDGVTYGQC EMQVNFKERT AMPPERARGA IARTYLYMSE 180
  181 QYGLRLSKAQ SQLMQAWNNQ YPVSEWECVR DQRIEKVQGN SNRFVREQCP N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	2g7eA
Description:	No description for 2g7eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits