YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254289467, gi...
Organism:	Escherichia coli BL21(DE3)
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254289467, gi....

Description	E-value	Query Range	Subject Range
gi\|170683531, gi... - gi\|170683531\|ref\|YP_001744944.1\| pemK protein 1 [Escherichia coli SMS-3-5], gi\|170521249\|gb\|ACB19427... gi\|215266171, gi... - gi\|215488099\|ref\|YP_002330530.1\| toxin ChpA [Escherichia coli O127:H6 str. E2348/69], gi\|215266171\|e... gi\|218366539, gi... - gi\|218559770\|ref\|YP_002392683.1\| toxin ChpA [Escherichia coli S88], gi\|218366539\|emb\|CAR04292.1\| tox... gi\|218428469, gi... - gi\|218690905\|ref\|YP_002399117.1\| toxin ChpA [Escherichia coli ED1a], gi\|218428469\|emb\|CAR09395.2\| to... gi\|115514135, gi... - gi\|117625011\|ref\|YP_853999.1\| toxin ChpA [Escherichia coli APEC O1], gi\|115514135\|gb\|ABJ02210.1\| pro... gi\|226899630, gi... - gi\|237706590\|ref\|ZP_04537071.1\| toxin ChpA [Escherichia sp. 3_2_53FAA], gi\|226899630\|gb\|EEH85889.1\| ... gi\|91073722, gi\|... - gi\|91212148\|ref\|YP_542134.1\| toxin ChpA [Escherichia coli UTI89], gi\|91073722\|gb\|ABE08603.1\| probabl...	139.0	[0..1]	[111..1]
gi\|194439656, gi... - gi\|83584962\|ref\|ZP_00923618.1\| COG2337: Growth inhibitor [Escherichia coli 101-1], gi\|194439656\|ref\|...	137.0	[0..1]	[111..1]
gi\|218362101, gi... - gi\|218555333\|ref\|YP_002388246.1\| toxin ChpA [Escherichia coli IAI1], gi\|218362101\|emb\|CAQ99710.1\| to... gi\|157159087, gi... - gi\|75187510\|ref\|ZP_00700777.1\| COG2337: Growth inhibitor [Escherichia coli E24377A], gi\|157159087\|re... gi\|218353113, gi... - gi\|218696381\|ref\|YP_002404048.1\| toxin ChpA [Escherichia coli 55989], gi\|218353113\|emb\|CAU98940.1\| t... gi\|209913490, gi... - gi\|209920231\|ref\|YP_002294315.1\| toxin ChpA [Escherichia coli SE11], gi\|209913490\|dbj\|BAG78564.1\| pu...	137.0	[0..1]	[111..1]
gi\|31616032, gi\|... - gi\|31616032\|pdb\|1UB4\|B Chain B, Crystal Structure Of Mazef Complex, gi\|31616031\|pdb\|1UB4\|A Chain A, ...	135.0	[0..2]	[111..1]
gi\|110642923, gi... - gi\|110642923\|ref\|YP_670653.1\| toxin ChpA [Escherichia coli 536], gi\|110344515\|gb\|ABG70752.1\| PemK-li... gi\|190908568, gi... - gi\|75241828\|ref\|ZP_00725647.1\| COG2337: Growth inhibitor [Escherichia coli F11], gi\|191171268\|ref\|ZP...	135.0	[0..1]	[111..1]
gi\|187730280, gi... - gi\|75176356\|ref\|ZP_00696500.1\| COG2337: Growth inhibitor [Shigella boydii BS512], gi\|187730280\|ref\|Y... gi\|81246492, gi\|... - gi\|82545081\|ref\|YP_409028.1\| toxin ChpA [Shigella boydii Sb227], gi\|81246492\|gb\|ABB67200.1\| ChpA [Sh...	135.0	[0..1]	[111..1]
gi\|58000729, gi\|... - gi\|58038315\|ref\|YP_190284.1\| toxin ChpA [Gluconobacter oxydans 621H], gi\|58000729\|gb\|AAW59628.1\| Pem...	133.0	[0..2]	[111..1]
gi\|75212598 - gi\|75212598\|ref\|ZP_00712622.1\| COG2337: Growth inhibitor [Escherichia coli B171]	132.0	[0..1]	[106..1]
gi\|167036913, gi... - gi\|76796513\|ref\|ZP_00778873.1\| PemK-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|167039618, gi... - gi\|167039618\|ref\|YP_001662603.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter s... gi\|242230427, gi... - gi\|242258050\|ref\|ZP_04802887.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter sp... gi\|241903946, gi... - gi\|241903946\|ref\|ZP_04788660.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter br...	131.0	[0..6]	[111..2]
gi\|255316165 - gi\|255316165\|ref\|ZP_05357748.1\| putative regulator of cell growth [Clostridium difficile QCD-76w55] gi\|255518826 - gi\|255518826\|ref\|ZP_05386502.1\| putative regulator of cell growth [Clostridium difficile QCD-97b34] gi\|90572757, gi\|... - gi\|90572757\|ref\|ZP_01229280.1\| hypothetical protein CdifQ_02003809 [Clostridium difficile QCD-32g58]... gi\|255652005 - gi\|255652005\|ref\|ZP_05398907.1\| putative regulator of cell growth [Clostridium difficile QCD-37x79] gi\|126701084, gi... - gi\|126701084\|ref\|YP_001089981.1\| putative regulator of cell growth [Clostridium difficile 630], gi\|1... gi\|255657415 - gi\|255657415\|ref\|ZP_05402824.1\| putative regulator of cell growth [Clostridium difficile QCD-23m63] gi\|254977085 - gi\|254977085\|ref\|ZP_05273557.1\| putative regulator of cell growth [Clostridium difficile QCD-66c26] gi\|255094413 - gi\|255094413\|ref\|ZP_05323891.1\| putative regulator of cell growth [Clostridium difficile CIP 107932] gi\|255102670 - gi\|255102670\|ref\|ZP_05331647.1\| putative regulator of cell growth [Clostridium difficile QCD-63q42] gi\|255308491 - gi\|255308491\|ref\|ZP_05352662.1\| putative regulator of cell growth [Clostridium difficile ATCC 43255]	131.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRYVPDMG DLIWVDFDPT KGSEQAGHRP AVVLSPFMYN NKTGMCLCVP CTTQSKGYPF  60
   61 EVVLSGQERD GVALADQVKS IAWRARGATK KGTVAPEELQ LIKAKINVLI G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1ub4A
Description:	MazF protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits