YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229838329, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229838329, gi....

Description	E-value	Query Range	Subject Range
gi\|197093142, gi... - gi\|197361666\|ref\|YP_002141302.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enteric... gi\|197265147, gi... - gi\|197265147\|ref\|ZP_03165221.1\| protein div [Salmonella enterica subsp. enterica serovar Saintpaul s... gi\|194711919, gi... - gi\|194736417\|ref\|YP_002115442.1\| protein div [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|194468623, gi... - gi\|194468623\|ref\|ZP_03074607.1\| protein div [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|214002043 - gi\|214002043\|ref\|ZP_03412778.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|213648271 - gi\|213648271\|ref\|ZP_03378324.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|213580270 - gi\|213580270\|ref\|ZP_03362096.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|213426974 - gi\|213426974\|ref\|ZP_03359724.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... FLK_SALTY - Flagellar regulator flk OS=Salmonella typhimurium GN=flk PE=1 SV=1 gi\|16761296 - gi\|16761296\|ref\|NP_456913.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=flk] [protein=flagella biosynthesis regulator] [protein_id=YP_005238454.1] [location=2535147..... gi\|205338610, gi... - gi\|205338610\|gb\|EDZ25374.1\| protein div [Salmonella enterica subsp. enterica serovar Heidelberg str.... gi\|197289668, gi... - gi\|197289668\|gb\|EDY29031.1\| protein div [Salmonella enterica subsp. enterica serovar Schwarzengrund ... gi\|168229747, gi... - gi\|205335767\|gb\|EDZ22531.1\| protein div [Salmonella enterica subsp. enterica serovar Kentucky str. C... gi\|205328820, gi... - gi\|205328820\|gb\|EDZ15584.1\| protein div [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- st... gi\|194406160, gi... - gi\|194447856\|ref\|YP_002046427.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enteric... gi\|194443243, gi... - gi\|194443243\|ref\|YP_002041635.1\| protein div [Salmonella enterica subsp. enterica serovar Newport st... gi\|56412732, gi\|... - gi\|56412732\|ref\|YP_149807.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se... gi\|168817891, gi... - gi\|205344870\|gb\|EDZ31634.1\| protein div [Salmonella enterica subsp. enterica serovar Weltevreden str... gi\|238912350 - gi\|238912350\|ref\|ZP_04656187.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica... gi\|168465917, gi... - gi\|195631434\|gb\|EDX49994.1\| protein div [Salmonella enterica subsp. enterica serovar Newport str. SL... FLK_SALTY - Flagellar regulator flk OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=flk PE=1 ... gi\|167549622, gi... - gi\|205325369\|gb\|EDZ13208.1\| protein div [Salmonella enterica subsp. enterica serovar Saintpaul str. ... gi\|29141008, gi\|... - gi\|29141008\|ref\|NP_804350.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se... gi\|161362257, gi... - gi\|161612893\|ref\|YP_001586858.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enteric... FLK_SALTY - Flagellar regulator flk OS=Salmonella typhimurium GN=flk PE=1 SV=1 gi\|16503595, gi\|... - gi\|25358837\|pir\|\|AI0802 Div protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (...	0.0	[1..342]	[1..333]
gi\|238791921, gi... - gi\|77979069\|ref\|ZP_00834490.1\| hypothetical protein YintA_01001037 [Yersinia intermedia ATCC 29909],...	0.0	[1..345]	[1..345]
gi\|62128576, gi\|... - gi\|62180943\|ref\|YP_217360.1\| flagella biosynthesis regulator [Salmonella enterica subsp. enterica se...	0.0	[35..342]	[1..305]
gi\|218370783, gi... - gi\|218700797\|ref\|YP_002408426.1\| flagella biosynthesis regulator [Escherichia coli IAI39], gi\|218370... gi\|26248710, gi\|... - gi\|26248710\|ref\|NP_754750.1\| flagella biosynthesis regulator [Escherichia coli CFT073], gi\|26109115\|...	0.0	[23..341]	[19..330]
gi\|110344117, gi... - gi\|110642525\|ref\|YP_670255.1\| flagella biosynthesis regulator [Escherichia coli 536], gi\|110344117\|g... gi\|191169918, gi... - gi\|75243132\|ref\|ZP_00726838.1\| hypothetical protein EcolF_01000355 [Escherichia coli F11], gi\|191169... gi\|218690481, gi... - gi\|218690481\|ref\|YP_002398693.1\| flagella biosynthesis regulator [Escherichia coli ED1a], gi\|2184280...	0.0	[23..341]	[19..330]
gi\|218554876, gi... - gi\|218554876\|ref\|YP_002387789.1\| flagella biosynthesis regulator [Escherichia coli IAI1], gi\|2183616... gi\|195183112 - gi\|195183112\|dbj\|BAG66672.1\| predicted flagella assembly protein [Escherichia coli O111:H-] gi\|82544802, gi\|... - gi\|82544802\|ref\|YP_408749.1\| flagella biosynthesis regulator [Shigella boydii Sb227], gi\|81246213\|gb... gi\|209919821, gi... - gi\|209919821\|ref\|YP_002293905.1\| flagella biosynthesis regulator [Escherichia coli SE11], gi\|2099130... gi\|194432943, gi... - gi\|83570069\|ref\|ZP_00921516.1\| hypothetical protein Sdys1_01001660 [Shigella dysenteriae 1012], gi\|1... gi\|75235527, gi\|... - gi\|75235527\|ref\|ZP_00719718.1\| hypothetical protein EcolE1_01002706 [Escherichia coli E110019], gi\|1... gi\|192931916, gi... - gi\|75259780\|ref\|ZP_00731082.1\| hypothetical protein EcolE2_01000697 [Escherichia coli E22], gi\|19306... gi\|194428602, gi... - gi\|75210135\|ref\|ZP_00710307.1\| hypothetical protein EcolB_01002690 [Escherichia coli B171], gi\|19442... gi\|75231413, gi\|... - gi\|75231413\|ref\|ZP_00717801.1\| hypothetical protein EcolB7_01000567 [Escherichia coli B7A], gi\|19116...	0.0	[23..341]	[19..330]
gi\|75177890, gi\|... - gi\|75177890\|ref\|ZP_00697952.1\| hypothetical protein SboyB_01002095 [Shigella boydii BS512], gi\|18773...	0.0	[23..341]	[19..330]
gi\|74312838, gi\|... - gi\|74312838\|ref\|YP_311257.1\| flagella biosynthesis regulator [Shigella sonnei Ss046], gi\|73856315\|gb...	0.0	[23..341]	[19..330]
gi\|24052762, gi\|... - gi\|24113693\|ref\|NP_708203.1\| flagella biosynthesis regulator [Shigella flexneri 2a str. 301], gi\|240... gi\|30042002, gi\|... - gi\|30063747\|ref\|NP_837918.1\| flagella biosynthesis regulator [Shigella flexneri 2a str. 2457T], gi\|3...	0.0	[23..341]	[19..330]
gi\|75196364, gi\|... - gi\|75196364\|ref\|ZP_00706434.1\| hypothetical protein EcolH_01002172 [Escherichia coli HS], gi\|1571618... gi\|218352652, gi... - gi\|218695920\|ref\|YP_002403587.1\| flagella biosynthesis regulator [Escherichia coli 55989], gi\|218352...	0.0	[23..341]	[19..330]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPLNGPGVP IGNDRHITPT KLTAQSTVED QALTPAQRTT LEKLIVRIMA LSPVKSAEIW  60
   61 AGLRHNLSLD ATGDLLARHF QPAEQLLQTR LSQAQENHAS QQLRQQLTAL LPQGNNRQAV 120
  121 SDFIRQQFGH TVLSQLSHTE LQQVLVLLQS GTLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPQPQLTTLT DRPLLPAEHQ NIQSLVAKLS AATGEQPTKI WQTLFDMVGV KHHDPLPARH  60
   61 FQLLSQFLQT KVALSQQTAP TLVNLQTALK QPADAQEQQL LADYSQNRFQ ASPTTPLTQA 120
  121 QLNDIINILF AARLEKANAA QYLDEEHKPL QPLINPFIAS LPESLQPLLQ KPSLVVVALI 180
  181 IVIAFLLAIF L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits