YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229897948, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229897948, gi....

Description	E-value	Query Range	Subject Range
gi\|22126351, gi\|... - gi\|22126351\|ref\|NP_669774.1\| flagellar biosynthesis protein FliT [Yersinia pestis KIM], gi\|21959334\|... gi\|45436233, gi\|... - gi\|45441373\|ref\|NP_992912.1\| flagellar biosynthesis protein FliT [Yersinia pestis biovar Microtus st...	135.0	[0..1]	[120..18]
FLIT_YERP3 - Flagellar protein FliT OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fliT PE=3 S... FLIT_YERPS - Flagellar protein FliT OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=fliT PE=3 SV=1 FLIT_YERPY - Flagellar protein FliT OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fliT PE=3 SV=1 FLIT_YERPB - Flagellar protein FliT OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fliT PE=3 SV=1 FLIT_YERPS - Flagellar protein FliT OS=Yersinia pseudotuberculosis GN=fliT PE=3 SV=1	129.0	[0..1]	[120..1]
gi\|238723586, gi... - gi\|77975699\|ref\|ZP_00831233.1\| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV...	129.0	[0..1]	[120..1]
gi\|238717587, gi... - gi\|77961124\|ref\|ZP_00824970.1\| COG1538: Outer membrane protein [Yersinia mollaretii ATCC 43969], gi\|...	129.0	[0..1]	[120..1]
gi\|77957933, gi\|... - gi\|77957933\|ref\|ZP_00821976.1\| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV...	127.0	[0..1]	[120..1]
FLIT_SALCH - Flagellar protein FliT OS=Salmonella choleraesuis GN=fliT PE=3 SV=1 FLIT_SALTI - Flagellar protein fliT OS=Salmonella typhi GN=fliT PE=3 SV=1 FLIT_SALTI - Flagellar protein FliT OS=Salmonella typhi GN=fliT PE=3 SV=1 FLIT_SALTY - Flagellar protein FliT OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliT PE=1 ... gi\|29141402, gi\|... - gi\|29141402\|ref\|NP_804744.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. enteric... gi\|16760906 - gi\|16760906\|ref\|NP_456523.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. enteric... gi\|168823004, gi... - gi\|205340672\|gb\|EDZ27436.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Welt... FLIT_SALNS - Flagellar protein FliT OS=Salmonella newport (strain SL254) GN=fliT PE=3 SV=1 FLIT_SALHS - Flagellar protein FliT OS=Salmonella heidelberg (strain SL476) GN=fliT PE=3 SV=1 gi\|194470970, gi... - gi\|194470970\|ref\|ZP_03076954.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... gi\|168239200, gi... - gi\|197288042\|gb\|EDY27429.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Schw... gi\|205336348, gi... - gi\|205336348\|gb\|EDZ23112.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Heid... gi\|168259752, gi... - gi\|205351182\|gb\|EDZ37813.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Hada... gi\|168462498, gi... - gi\|195634448\|gb\|EDX52800.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Newp... gi\|205322658, gi... - gi\|205322658\|gb\|EDZ10497.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Sain... gi\|167993535, gi... - gi\|205328385\|gb\|EDZ15149.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar 4,[5... gi\|168234134, gi... - gi\|205331871\|gb\|EDZ18635.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Kent... FLIT_SALTY - Flagellar protein FliT OS=Salmonella typhimurium GN=fliT PE=1 SV=1 gi\|214001881 - gi\|214001881\|ref\|ZP_03412616.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... FLIT_SALPC - Flagellar protein FliT OS=Salmonella paratyphi C (strain RKS4594) GN=fliT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=fliT] [protein=flagellar biosynthesis protein FliT] [protein_id=YP_005237931.1] [location=2062... gi\|213426348 - gi\|213426348\|ref\|ZP_03359098.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|213580923 - gi\|213580923\|ref\|ZP_03362749.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... FLIT_SALTY - Flagellar protein fliT OS=Salmonella typhimurium GN=fliT PE=1 SV=1 gi\|213649071 - gi\|213649071\|ref\|ZP_03379124.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|213855239 - gi\|213855239\|ref\|ZP_03383479.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|200390087, gi... - gi\|200390087\|ref\|ZP_03216698.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... gi\|238912465 - gi\|238912465\|ref\|ZP_04656302.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|204930988, gi... - gi\|204930988\|ref\|ZP_03221814.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... FLIT_SALEP - Flagellar protein FliT OS=Salmonella enteritidis PT4 (strain P125109) GN=fliT PE=3 SV=1 gi\|213053503 - gi\|213053503\|ref\|ZP_03346381.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... FLIT_SALPB - Flagellar protein FliT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fliT PE=3 SV=1 FLIT_SALPB - Flagellar protein fliT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fliT PE=3 SV=1 FLIT_SALSV - Flagellar protein FliT OS=Salmonella schwarzengrund (strain CVM19633) GN=fliT PE=3 SV=1 FLIT_SALA4 - Flagellar protein FliT OS=Salmonella agona (strain SL483) GN=fliT PE=3 SV=1 FLIT_SALCH - Flagellar protein fliT OS=Salmonella choleraesuis GN=fliT PE=3 SV=1 gi\|197265861, gi... - gi\|197265861\|ref\|ZP_03165935.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... FLIT_SALDC - Flagellar protein FliT OS=Salmonella dublin (strain CT_02021853) GN=fliT PE=3 SV=1 FLIT_SALCH - Flagellar protein FliT OS=Salmonella choleraesuis (strain SC-B67) GN=fliT PE=3 SV=1	127.0	[0..1]	[115..1]
FLIT_SALPA - Flagellar protein FliT OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=fliT PE=3 SV=1 FLIT_SALPK - Flagellar protein FliT OS=Salmonella paratyphi A (strain AKU_12601) GN=fliT PE=3 SV=1 FLIT_SALPA - Flagellar protein FliT OS=Salmonella paratyphi A GN=fliT PE=3 SV=1	125.0	[0..1]	[115..1]
gi\|238726652, gi... - gi\|77979911\|ref\|ZP_00835327.1\| hypothetical protein YintA_01000407 [Yersinia intermedia ATCC 29909],...	124.0	[0..1]	[120..1]
gi\|33592506, gi\|... - gi\|33592506\|ref\|NP_880150.1\| flagellar protein FliT [Bordetella pertussis Tohama I], gi\|33572152\|emb...	124.0	[0..1]	[106..4]
FLIT_DICCH - Flagellar protein FliT OS=Dickeya chrysanthemi GN=fliT PE=3 SV=1	123.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERHQHLLSE YQQILTLSEQ MLMLATVENW NALVDLEMTY LKAVENTANI TISSCTSPVL  60
   61 QELLRQKLRS ILENEIEIKR LLQRRLDKLS ELVGQSTRQQ AVNRTYGQFP DQALLLGETQ 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.026872
Match:	PF05400.4
Description:	No description for PF05400.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits