YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254290754, gi...
Organism:	Escherichia coli BL21(DE3)
Length:	652 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254290754, gi....

Description	E-value	Query Range	Subject Range
gi\|75514828, gi\|... - gi\|75514828\|ref\|ZP_00737057.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|157163539, gi... - gi\|75197927\|ref\|ZP_00707997.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher...	714.0	[0..1]	[652..1]
gi\|238793305, gi... - gi\|77978118\|ref\|ZP_00833551.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin...	712.0	[0..1]	[652..1]
gi\|73858039, gi\|... - gi\|74314562\|ref\|YP_312981.1\| acetyl-CoA synthetase [Shigella sonnei Ss046], gi\|73858039\|gb\|AAZ90746....	712.0	[0..1]	[652..1]
gi\|226901561, gi... - gi\|237703649\|ref\|ZP_04534130.1\| acetyl-CoA synthetase [Escherichia sp. 3_2_53FAA], gi\|226901561\|gb\|E... gi\|91075186, gi\|... - gi\|91213612\|ref\|YP_543598.1\| acetyl-CoA synthetase [Escherichia coli UTI89], gi\|91075186\|gb\|ABE10067... gi\|117626351, gi... - gi\|117626351\|ref\|YP_859674.1\| acetyl-CoA synthetase [Escherichia coli APEC O1], gi\|115515475\|gb\|ABJ0... gi\|218561154, gi... - gi\|218561154\|ref\|YP_002394067.1\| acetyl-CoA synthetase [Escherichia coli S88], gi\|218367923\|emb\|CAR0...	712.0	[0..1]	[652..1]
gi\|238787446, gi... - gi\|77973300\|ref\|ZP_00828849.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Yersin...	711.0	[0..1]	[652..1]
gi\|75241111, gi\|... - gi\|75241111\|ref\|ZP_00724985.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... ACSA_ECOL6 - Acetyl-coenzyme A synthetase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=acs P... gi\|227836044, gi... - gi\|227886903\|ref\|ZP_04004708.1\| acetyl-CoA synthetase [Escherichia coli 83972], gi\|227836044\|gb\|EEJ4... gi\|110644420, gi... - gi\|110644420\|ref\|YP_672150.1\| acetyl-CoA synthetase [Escherichia coli 536], gi\|110346012\|gb\|ABG72249... gi\|218692361, gi... - gi\|218692361\|ref\|YP_002400573.1\| acetyl-CoA synthetase [Escherichia coli ED1a], gi\|218429925\|emb\|CAR... ACSA_ECOL6 - Acetyl-coenzyme A synthetase OS=Escherichia coli O6 GN=acs PE=3 SV=1	711.0	[0..1]	[652..1]
ACSA_SALTI - Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 gi\|213427241 - gi\|213427241\|ref\|ZP_03359991.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213163052 - gi\|213163052\|ref\|ZP_03348762.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|16762956 - gi\|16762956\|ref\|NP_458573.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar Typh... ACSA_SALTI - Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 gi\|29144443, gi\|... - gi\|29144443\|ref\|NP_807785.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar Typh... gi\|214002545 - gi\|214002545\|ref\|ZP_03413280.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213852760 - gi\|213852760\|ref\|ZP_03382292.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar T...	711.0	[0..1]	[652..1]
ACSA_SALTY - Acetyl-coenzyme A synthetase OS=Salmonella typhimurium GN=acs PE=1 SV=1 ACSA_SALTY - Acetyl-coenzyme A synthetase OS=Salmonella typhimurium GN=acs PE=1 SV=1 lcl\|NC_016856.1_... - [gene=acs] [protein=acetyl-CoA synthetase] [protein_id=YP_005240576.1] [location=complement(4527256.... gi\|197244220, gi... - gi\|197265965\|ref\|ZP_03166039.1\| acetate--CoA ligase [Salmonella enterica subsp. enterica serovar Sai... ACSA_SALTY - Acetyl-coenzyme A synthetase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=acs ... gi\|205330151, gi... - gi\|205330151\|gb\|EDZ16915.1\| acetate--CoA ligase [Salmonella enterica subsp. enterica serovar 4,[5],1...	711.0	[0..1]	[652..1]
gi\|110617460, gi... - gi\|110807912\|ref\|YP_691432.1\| acetyl-CoA synthetase [Shigella flexneri 5 str. 8401], gi\|110617460\|gb...	710.0	[0..1]	[652..1]
gi\|31616029, gi\|... - gi\|31616030\|pdb\|1PG4\|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica, gi\|31616029\|pdb\|1PG4\|A C...	709.0	[0..1]	[652..1]

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Predicted Domain #1

Region A:
Residues: [1-652]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIHKHTIP ANIADRCLIN PQQYEAMYQQ SINVPDTFWG EQGKILDWIK PYQKVKNTSF  60
   61 APGNVSIKWY EDGTLNLAAN CLDRHLQENG DRTAIIWEGD DASQSKHISY KELHRDVCRF 120
  121 ANTLLELGIK KGDVVAIYMP MVPEAAVAML ACARIGAVHS VIFGGFSPEA VAGRIIDSNS 180
  181 RLVITSDEGV RAGRSIPLKK NVDDALKNPN VTSVEHVVVL KRTGGKIDWQ EGRDLWWHDL 240
  241 VEQASDQHQA EEMNAEDPLF ILYTSGSTGK PKGVLHTTGG YLVYAALTFK YVFDYHPGDI 300
  301 YWCTADVGWV TGHSYLLYGP LACGATTLMF EGVPNWPTPA RMAQVVDKHQ VNILYTAPTA 360
  361 IRALMAEGDK AIEGTDRSSL RILGSVGEPI NPEAWEWYWK KIGNEKCPVV DTWWQTETGG 420
  421 FMITPLPGAT ELKAGSATRP FFGVQPALVD NEGNPLEGAT EGSLVITDSW PGQARTLFGD 480
  481 HERFEQTYFS TFKNMYFSGD GARRDEDGYY WITGRVDDVL NVSGHRLGTA EIESALVAHP 540
  541 KIAEAAVVGI PHNIKGQAIY AYVTLNHGEE PSPELYAEVR NWVRKEIGPL ATPDVLHWTD 600
  601 SLPKTRSGKI MRRILRKIAA GDTSNLGDTS TLADPGVVEK LLEEKQAIAM PS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits