YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|255016843
Organism:	Listeria monocytogenes FSL F2-515
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|255016843.

Description	E-value	Query Range	Subject Range
gi\|89085984, gi\|... - gi\|89099375\|ref\|ZP_01172252.1\| YkuQ [Bacillus sp. NRRL B-14911], gi\|89085984\|gb\|EAR65108.1\| YkuQ [Ba...	178.0	[0..1]	[236..1]
DAPH_LISIV - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria ivanovii GN=dapH PE=3 S...	174.0	[0..1]	[236..1]
DAPH_BACCN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus cytotoxicus (strain DSM...	173.0	[0..1]	[236..1]
gi\|16078482, gi\|... - gi\|2633789\|emb\|CAB13291.1\| ykuQ [Bacillus subtilis subsp. subtilis str. 168], gi\|16078482\|ref\|NP_389... gi\|7475869, gi\|8... - gi\|81556009\|sp\|O34981.1\|DAPH_BACSU RecName: Full=2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acet...	172.0	[0..1]	[236..1]
DAPH_OCEIH - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Oceanobacillus iheyensis GN=dapH... DAPH_OCEIH - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Oceanobacillus iheyensis (strain...	170.0	[0..3]	[236..1]
gi\|227897066, gi... - gi\|227897066\|ref\|ZP_04014871.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Lact... DAPH_LACPL - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactobacillus plantarum GN=dapH ... gi\|254045991, gi... - gi\|254557064\|ref\|YP_003063481.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Lac... DAPH_LACPL - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactobacillus plantarum (strain ...	169.0	[0..1]	[236..1]
gi\|254872946 - gi\|254872946\|ref\|ZP_05245656.1\| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [... DAPH_LISMH - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria monocytogenes serotype ... DAPH_LISW6 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria welshimeri serovar 6b (... DAPH_LISIN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria innocua serovar 6a (str... DAPH_LISIN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria innocua GN=dapH PE=3 SV...	165.0	[0..1]	[236..1]
gi\|112943862 - gi\|112943862\|gb\|ABI26325.1\| tetrahydrodipicolinate N-succinyltransferase [Lactobacillus reuteri] gi\|227544851, gi... - gi\|227544851\|ref\|ZP_03974900.1\| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [... gi\|227957994, gi... - gi\|227967905\|ref\|ZP_04022401.1\| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [...	161.0	[0..1]	[236..1]
DAPH_LACC3 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Lactobacillus casei (strain ATCC...	160.0	[0..1]	[236..1]
gi\|194468403, gi... - gi\|92089121\|ref\|ZP_01274073.1\| transferase hexapeptide repeat [Lactobacillus reuteri 100-23], gi\|918...	160.0	[0..1]	[236..1]

Back

Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQMDAHQII SFIQNSKKAT PVKVYLKGDL EKIDFPSDVK TFITGNAGTV FGEWAVVEPL  60
   61 LEANKANIED YVIENDRRNS AIPLLDMKNI NARIEPGAVI RDQVTIGDNA VIMMGASINI 120
  121 GSVIGDGTMI DMNVVLGGRA TVGKNCHIGA GSVLAGVVEP PSAQPVIVED NVVVGANVVV 180
  181 LEGVRIGEGA VVAAGAIVTK DVAPGTVVAG IPARELKKLD AKTASKTEIM QELRQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2jf2A
Description:	No description for 2jf2A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.00406253837813	bayes_pls_golite062009
acyltransferase activity	1.97801068671318	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.94103020303346	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
O-acyltransferase activity	1.15494456676161	bayes_pls_golite062009
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity	0.94437024014042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: