YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229898377, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229898377, gi....

Description	E-value	Query Range	Subject Range
gi\|77963329 - gi\|77963329\|ref\|ZP_00827140.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ...	3.0E-53	[1..172]	[1..172]
gi\|77979494, gi\|... - gi\|77979494\|ref\|ZP_00834912.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ...	4.0E-52	[1..171]	[1..171]
gi\|8163828 - gi\|8163828\|gb\|AAF73869.1\|AF220669_1 putative O6-methylguanine DNA methyltransferase [Klebsiella pneu...	4.0E-52	[1..170]	[15..184]
gi\|77956626 - gi\|77956626\|ref\|ZP_00820712.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ...	2.0E-50	[9..172]	[1..164]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	2.0E-50	[4..167]	[1..154]
gi\|33152202, gi\|... - gi\|33152202\|ref\|NP_873555.1\| methylated-DNA--protein-cysteine S-methyltransferase [Haemophilus ducre...	6.0E-50	[1..170]	[1..168]
gi\|238790360, gi... - gi\|77975381\|ref\|ZP_00830917.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ...	6.0E-50	[9..171]	[1..163]
gi\|2935421 - gi\|2935421\|gb\|AAC25987.1\| adaptive response regulatory protein [Pseudoalteromonas sp. S9]	7.0E-50	[4..170]	[185..350]
gi\|75242135, gi\|... - gi\|75242135\|ref\|ZP_00725929.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Escherich... gi\|110343161, gi... - gi\|110641569\|ref\|YP_669299.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Escherichia c...	9.0E-50	[1..170]	[1..170]
gi\|218351641, gi... - gi\|218694909\|ref\|YP_002402576.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Escherichi... gi\|75179010, gi\|... - gi\|75179010\|ref\|ZP_00699028.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Shigella ... gi\|82544208, gi\|... - gi\|82544208\|ref\|YP_408155.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Shigella boydi...	1.0E-49	[1..170]	[1..170]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTFFIDRMA TPQGELLLIA DEENQLRAID WTDHHDRLMK LLRNHYGADT FTLVEKRNPG  60
   61 GLSESMQRYF AGELSIIDTL PVKTAGTDFQ RQVWQELRKI PCGETISYGE LAKRINRPTA 120
  121 SRAVGMANGL NPISIVVPCH RVIGSQGALT GYAGGVDRKR WLLVHEGYLL GC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.9938943760254	bayes_pls_golite062009
S-methyltransferase activity	2.96219931728042	bayes_pls_golite062009
catalytic activity	2.27882522649583	bayes_pls_golite062009
methyltransferase activity	1.63681159093596	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.6341981985862	bayes_pls_golite062009
transferase activity	1.42883081715544	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: