YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254818177
Organism:	Mycobacterium tuberculosis KZN 4207
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254818177.

Description	E-value	Query Range	Subject Range
PAND_NOCFA - Aspartate 1-decarboxylase OS=Nocardia farcinica (strain IFM 10152) GN=panD PE=3 SV=1 PAND_NOCFA - Aspartate 1-decarboxylase OS=Nocardia farcinica GN=panD PE=3 SV=1	227.0	[0..1]	[135..1]
PAND_MYCA1 - Aspartate 1-decarboxylase OS=Mycobacterium avium (strain 104) GN=panD PE=1 SV=1 PAND_MYCPA - Aspartate 1-decarboxylase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=panD PE=... gi\|254773508 - gi\|254773508\|ref\|ZP_05215024.1\| aspartate alpha-decarboxylase [Mycobacterium avium subsp. avium ATCC... PAND_MYCPA - Aspartate 1-decarboxylase OS=Mycobacterium paratuberculosis GN=panD PE=3 SV=1	226.0	[0..1]	[136..1]
PAND_MYCVP - Aspartate 1-decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=panD PE=1 SV=1	224.0	[0..1]	[135..1]
PAND_PELTS - Aspartate 1-decarboxylase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=...	222.0	[0..1]	[129..1]
PAND_RHOJR - Aspartate 1-decarboxylase OS=Rhodococcus jostii (strain RHA1) GN=panD PE=1 SV=1	221.0	[0..1]	[136..1]
gi\|83726522, gi\|... - gi\|83746753\|ref\|ZP_00943801.1\| Aspartate 1-decarboxylase [Ralstonia solanacearum UW551], gi\|83726522...	221.0	[0..1]	[118..60]
PAND_CALS8 - Aspartate 1-decarboxylase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp...	221.0	[0..1]	[123..1]
PAND_RHOFT - Aspartate 1-decarboxylase OS=Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) GN=pa...	219.0	[0..1]	[129..1]
PAND_BURVG - Aspartate 1-decarboxylase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=panD PE=3 SV=1	218.0	[0..1]	[128..1]
PAND_MYCLB - Aspartate 1-decarboxylase OS=Mycobacterium leprae (strain Br4923) GN=panD PE=3 SV=1 PAND_MYCLE - Aspartate 1-decarboxylase OS=Mycobacterium leprae (strain TN) GN=panD PE=3 SV=1 PAND_MYCLE - Aspartate 1-decarboxylase OS=Mycobacterium leprae GN=panD PE=3 SV=1	218.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTMLKSKI HRATVTCADL HYVGSVTIDA DLMDAADLLE GEQVTIVDID NGARLVTYAI  60
   61 TGERGSGVIG INGAAAHLVH PGDLVILIAY ATMDDARART YQPRIVFVDA YNKPIDMGHD 120
  121 PAFVPENAGE LLDPRLGVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	2c45A
Description:	No description for 2c45A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits