YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229516839, gi...
Organism:	Vibrio cholerae RC9
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229516839, gi....

Description	E-value	Query Range	Subject Range
gi\|83720943, gi\|... - gi\|83720943\|ref\|YP_443562.1\| ribosomal protein L14 [Burkholderia thailandensis E264], gi\|83654768\|gb...	194.0	[0..1]	[123..61]
gi\|75853466, gi\|... - gi\|75853466\|ref\|ZP_00761316.1\| COG0093: Ribosomal protein L14 [Vibrio sp. Ex25], gi\|116183087\|ref\|ZP... RL14_VIBCB - 50S ribosomal protein L14 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rplN PE=3 SV=1 gi\|254509440, gi... - gi\|254509440\|ref\|ZP_05121519.1\| ribosomal protein L14 [Vibrio parahaemolyticus 16], gi\|225098223\|ref... gi\|91228958, gi\|... - gi\|91228958\|ref\|ZP_01262853.1\| 50S ribosomal protein L14 [Vibrio alginolyticus 12G01], gi\|91187478\|g...	193.0	[0..1]	[123..1]
RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplN PE=3 SV=1 RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1	193.0	[0..1]	[123..1]
RL14_VIBVU - 50S ribosomal protein L14 OS=Vibrio vulnificus (strain CMCP6) GN=rplN PE=3 SV=1 RL14_VIBVY - 50S ribosomal protein L14 OS=Vibrio vulnificus (strain YJ016) GN=rplN PE=3 SV=1 RL14_VIBVU - 50S ribosomal protein L14 OS=Vibrio vulnificus GN=rplN PE=3 SV=1	193.0	[0..1]	[123..1]
gi\|105894482, gi... - gi\|107024293\|ref\|YP_622620.1\| ribosomal protein L14 [Burkholderia cenocepacia AU 1054], gi\|105894482...	192.0	[0..1]	[123..58]
gi\|84394580, gi\|... - gi\|84394580\|ref\|ZP_00993284.1\| 50S ribosomal protein L14 [Vibrio splendidus 12B01], gi\|84374800\|gb\|E...	192.0	[0..1]	[123..1]
gi\|90437103, gi\|... - gi\|90581688\|ref\|ZP_01237476.1\| 50S ribosomal protein L14 [Vibrio angustum S14], gi\|90437103\|gb\|EAS62...	192.0	[0..1]	[123..1]
RL14_VIBPA - 50S ribosomal protein L14 OS=Vibrio parahaemolyticus GN=rplN PE=3 SV=1 RL14_VIBPA - 50S ribosomal protein L14 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplN PE...	192.0	[0..1]	[123..1]
gi\|76809421, gi\|... - gi\|76809421\|ref\|YP_335130.1\| 50S ribosomal protein L14 [Burkholderia pseudomallei 1710b], gi\|7657887...	191.0	[0..1]	[123..41]
RL14_ACTP7 - 50S ribosomal protein L14 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplN PE=3 S... gi\|223042013, gi... - gi\|223042013\|ref\|ZP_03612194.1\| 50S ribosomal protein L14 [Actinobacillus minor 202], gi\|223017175\|g... RL14_HAEDU - 50S ribosomal protein L14 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rplN PE=3 SV=1 gi\|32035723 - gi\|32035723\|ref\|ZP_00135604.1\| COG0093: Ribosomal protein L14 [Actinobacillus pleuropneumoniae serov... gi\|247535237, gi... - gi\|251793838\|ref\|YP_003008570.1\| ribosomal protein L14 [Aggregatibacter aphrophilus NJ8700], gi\|2475... gi\|240948165, gi... - gi\|240948165\|ref\|ZP_04752568.1\| 50S ribosomal protein L14 [Actinobacillus minor NM305], gi\|240297518... RL14_HAEDU - 50S ribosomal protein L14 OS=Haemophilus ducreyi GN=rplN PE=3 SV=1 RL14_ACTPJ - 50S ribosomal protein L14 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplN PE=3 S...	191.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQMQTMLDA ADNSGARSVM CIKVLGGSHR RYAHVGDIIK VTVKEAIPRG KVKKGDVLKA  60
   61 VVVRTRKGVR RPDGSVIRFD RNACVLLNNN SEQPIGTRIF GPVTRELRNA KFMKIVSLAP 120
  121 EVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	1p85I
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.19249144486008	bayes_pls_golite062009
protein binding	0.555364167462951	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: