YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228815765, gi...
Organism:	Bacillus thuringiensis serovar monterrey BGSC 4AJ1
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228815765, gi....

Description	E-value	Query Range	Subject Range
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1	2.0E-61	[4..150]	[79..235]
gi\|125812068, gi... - gi\|47086117\|ref\|NP_998444.1\| ribosomal protein S2 [Danio rerio], gi\|45768675\|gb\|AAH67645.1\| Ribosoma...	2.0E-61	[4..150]	[80..236]
gi\|51258855, gi\|... - gi\|89267412\|emb\|CAJ83183.1\| ribosomal protein S2 [Xenopus tropicalis], gi\|56118428\|ref\|NP_001007869....	4.0E-61	[4..150]	[81..237]
gi\|109149636 - gi\|109149636\|ref\|XP_001114889.1\| PREDICTED: similar to 40S ribosomal protein S2 [Macaca mulatta]	5.0E-61	[4..150]	[22..178]
gi\|90991375 - gi\|90991375\|dbj\|BAE93069.1\| ribosomal protein S2 [Lethenteron japonicum]	7.0E-61	[9..150]	[86..236]
gi\|74186763 - gi\|74186763\|dbj\|BAE34836.1\| unnamed protein product [Mus musculus]	8.0E-61	[4..150]	[94..250]
gi\|73962612 - gi\|73962612\|ref\|XP_860827.1\| PREDICTED: similar to 40S ribosomal protein S2 isoform 3 [Canis familia...	8.0E-61	[4..150]	[60..216]
gi\|125857086, gi... - gi\|33417132\|gb\|AAH56066.1\| Rps2e protein [Xenopus laevis], gi\|148232341\|ref\|NP_001080882.1\| ribosoma...	1.0E-60	[4..150]	[81..237]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	1.0E-60	[4..150]	[94..250]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRIDPSKLE LEERVVTINR VAKVVKGGRR FRFAALVVVG DKNGHVGFGT GKAQEVPDAI  60
   61 RKAIEDAKKN LIAVPLVGTT IPHTINGHFG AGEVFLKPAA EGTGVIAGGP VRAVLELAGV 120
  121 QDILSKSLGS NTPINMIRAT VNGLSELKRA EDVAKLRGKS VEELLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1eg0B
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits