YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227816247, gi...
Organism:	Bacillus anthracis str. CDC 684
Length:	862 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227816247, gi....

Description	E-value	Query Range	Subject Range
gi\|63053546 - gi\|63053546\|gb\|AAY28601.1\| S-layer protein [Bacillus thuringiensis]	0.0	[1..862]	[1..863]
gi\|47558210, gi\|... - gi\|47564837\|ref\|ZP_00235881.1\| EA1 protein [Bacillus cereus G9241], gi\|47558210\|gb\|EAL16534.1\| EA1 p...	0.0	[1..862]	[1..862]
gi\|51977903, gi\|... - gi\|52144434\|ref\|YP_082394.1\| S-layer protein, EA1 protein [Bacillus cereus E33L], gi\|51977903\|gb\|AAU...	0.0	[1..862]	[1..861]
SLAP_BACLI - S-layer protein OS=Bacillus licheniformis PE=3 SV=1 gi\|206746096, gi... - gi\|206975634\|ref\|ZP_03236546.1\| S-layer protein EA1 [Bacillus cereus H3081.97], gi\|206746096\|gb\|EDZ5...	0.0	[1..857]	[1..870]
gi\|152974538, gi... - gi\|89200426\|ref\|ZP_01179179.1\| S-layer-like region [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	0.0	[1..857]	[1..875]
gi\|89156675, gi\|... - gi\|89205430\|ref\|ZP_01184000.1\| S-layer-like region:Cell wall hydrolase/autolysin [Bacillus weihenste...	8.0E-63	[9..484]	[4..478]
gi\|42735978, gi\|... - gi\|42780060\|ref\|NP_977307.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 10987], gi\|427...	3.0E-62	[9..472]	[4..450]
gi\|30261032, gi\|... - gi\|30261032\|ref\|NP_843409.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Ames], gi\|3... gi\|49183875, gi\|... - gi\|49183875\|ref\|YP_027127.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Sterne], gi... gi\|47501332, gi\|... - gi\|47526184\|ref\|YP_017533.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. 'Ames Ances... gi\|190566638, gi... - gi\|190566638\|ref\|ZP_03019555.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|172081114, gi... - gi\|177653886\|ref\|ZP_02935958.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|170708255, gi... - gi\|170708255\|ref\|ZP_02898700.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|170668393, gi... - gi\|170687580\|ref\|ZP_02878796.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|167513046, gi... - gi\|167638916\|ref\|ZP_02397190.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|167635887, gi... - gi\|167635887\|ref\|ZP_02394195.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|165871934, gi... - gi\|165871934\|ref\|ZP_02216576.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|229267567, gi... - gi\|229603159\|ref\|YP_002865468.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthraci... gi\|227816237, gi... - gi\|227816237\|ref\|YP_002816246.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthraci... gi\|254740030 - gi\|254740030\|ref\|ZP_05197722.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|254734322 - gi\|254734322\|ref\|ZP_05192035.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|254725695 - gi\|254725695\|ref\|ZP_05187477.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|254682909 - gi\|254682909\|ref\|ZP_05146770.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|254758468 - gi\|254758468\|ref\|ZP_05210495.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis... gi\|254753369 - gi\|254753369\|ref\|ZP_05205405.1\| surface-layer N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis...	3.0E-62	[9..472]	[4..450]

Back

Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTNSYKKV IAGTMTAAMV AGIVSPVAAA GKSFPDVPAG HWAEGSINYL VDKGAITGKP  60
   61 DGTYGPTESI DRASAAVIFT KILNLPVDEN AQPSFKDAKN IWSSKYIAAV EKAGVVKGDG 120
  121 KENFYPEGKI DRASFASMLV SAYNLKDKVN GELVTTFEDL LDHWGEEKAN ILINLGISVG 180
  181 TGGKWEPNKS VSRAEAAQFI ALTDKKYGKK DNAQAYVTDV KV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [223-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPTKLTLTG TGLDKLSADD VTLEGDKAVA IEASTDGTSA VVTLGGKVAP NKDLTVKVKN  60
   61 QSFVTKFVYE VKKLAVEKLT FDDDRAGQAI AFKLNDEKGN ADVEYLNLAN HDVKFVANNL 120
  121 DGSPANIFEG GEATSTTGKL AVGIKQGDYK VEVQVTKRGG LTVSNTGIIT VKNLDTPASA 180
  181 IKNVVFALDA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [413-706]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNDGVVNYGS KLSGKDFALN SQNLVVGEKA SLNKLVATIA GEDKVVDPGS ISIKSSNHGI  60
   61 ISVVNNYITA EAAGEATLTI KVGDVTKDVK FKVTTDSRKL VSVKANPDKL QVVQNKTLPV 120
  121 TFVTTDQYGD PFGANTAAIK EVLPKTGVVA EGGLDVVTTD SGSIGTKTIG VTGNDVGEGT 180
  181 VHFQNGNGAT LGSLYVNVTE GNVAFKNFEL VSKVGQYGQS PDTKLDLNVS TTVEYQLSKY 240
  241 TSDRVYSDPE NLEGYEVESK NLAVADAKIV GNKVVVTGKT PGKVDIHLTK NGAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1f00I
Description:	Intimin
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [707-862]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGKATVEIVQ ETIAIKSVNF KPVQTENFVE KKINIGTVLE LEKSNLDDIV KGINLTKETQ  60
   61 HKVRVVKSGA EQGKLYLDRN GDAVFNAGDV KLGDVTVSQT SDSALPNFKA DLYDTLTTKY 120
  121 TDKGTLVFKV LKDKDVITSE IGSQAVHVNV LNNPNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.221849
Match:	1cwvA
Description:	Invasin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits