YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227816865, gi...
Organism:	Bacillus anthracis str. CDC 684
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227816865, gi....

Description	E-value	Query Range	Subject Range
gi\|228748064, gi... - gi\|229013297\|ref\|ZP_04170438.1\| Purine nucleoside phosphorylase [Bacillus mycoides DSM 2048], gi\|228... gi\|228648571, gi... - gi\|229134896\|ref\|ZP_04263703.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST196], gi\|228... gi\|229061760, gi... - gi\|229061760\|ref\|ZP_04199093.1\| Purine nucleoside phosphorylase [Bacillus cereus AH603], gi\|22871750... gi\|163864026, gi... - gi\|89207378\|ref\|ZP_01185921.1\| Inosine guanosine and xanthosine phosphorylase:Purine nucleoside phos... gi\|228614679, gi... - gi\|229168831\|ref\|ZP_04296550.1\| Purine nucleoside phosphorylase [Bacillus cereus AH621], gi\|22861467...	2.0E-79	[1..273]	[1..273]
gi\|49480323, gi\|... - gi\|49480323\|ref\|YP_038146.1\| purine nucleoside phosphorylase [Bacillus thuringiensis serovar konkuki...	2.0E-78	[1..273]	[1..273]
gi\|152976496, gi... - gi\|89203719\|ref\|ZP_01182322.1\| Inosine guanosine and xanthosine phosphorylase:Purine nucleoside phos...	2.0E-78	[1..273]	[1..273]
gi\|89099050, gi\|... - gi\|89099050\|ref\|ZP_01171929.1\| purine nucleoside phosphorylase [Bacillus sp. NRRL B-14911], gi\|89086...	3.0E-78	[1..270]	[1..270]
PUNA_GEOSE - Purine nucleoside phosphorylase 1 OS=Geobacillus stearothermophilus GN=punA PE=1 SV=1	7.0E-77	[1..271]	[1..271]
gi\|56380690, gi\|... - gi\|56420848\|ref\|YP_148166.1\| purine nucleoside phosphorylase [Geobacillus kaustophilus HTA426], gi\|5...	3.0E-76	[1..271]	[1..271]
gi\|153175180, gi... - gi\|254827162\|ref\|ZP_05231849.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL N3-165],... gi\|153180002, gi... - gi\|254936838\|ref\|ZP_05268535.1\| purine nucleoside phosphorylase [Listeria monocytogenes F6900], gi\|1... gi\|16803992 - gi\|16803992\|ref\|NP_465477.1\| purine nucleoside phosphorylase [Listeria monocytogenes EGD-e] gi\|224498597 - gi\|224498597\|ref\|ZP_03666946.1\| purine nucleoside phosphorylase [Listeria monocytogenes Finland 1988... gi\|25286838, gi\|... - pir\|\|AI1318 purine-nucleoside phosphorylase homolog pnp [imported] - Listeria monocytogenes (strain ... gi\|224501247 - gi\|224501247\|ref\|ZP_03669554.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL R2-561] gi\|47014541, gi\|... - gi\|47097096\|ref\|ZP_00234666.1\| purine nucleoside phosphorylase [Listeria monocytogenes str. 1/2a F68... gi\|255026089 - gi\|255026089\|ref\|ZP_05298075.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL J2-003] gi\|126943729, gi... - gi\|254899350\|ref\|ZP_05259274.1\| purine nucleoside phosphorylase [Listeria monocytogenes J0161], gi\|1... gi\|254831446, gi... - gi\|254831446\|ref\|ZP_05236101.1\| purine nucleoside phosphorylase [Listeria monocytogenes 10403S], gi\|... gi\|153191449, gi... - gi\|254912511\|ref\|ZP_05262523.1\| purine nucleoside phosphorylase [Listeria monocytogenes J2818], gi\|1...	1.0E-74	[1..272]	[1..272]
gi\|10174148, gi\|... - gi\|15614094\|ref\|NP_242397.1\| purine nucleoside phosphorylase [Bacillus halodurans C-125], gi\|1017414... gi\|25286831 - pir\|\|C83841 purine nucleoside phosphorylase BH1531 [imported] - Bacillus halodurans (strain C-125)	2.0E-74	[1..271]	[2..272]
gi\|170662732, gi... - gi\|170662732\|gb\|EDT15415.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|168209733, gi... - gi\|170712135\|gb\|EDT24317.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|170715058, gi... - gi\|170715058\|gb\|EDT27240.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|182380302, gi... - gi\|182380302\|gb\|EDT77781.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|182624333, gi... - gi\|182624333\|ref\|ZP_02952118.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [C... gi\|110799224, gi... - gi\|110799224\|ref\|YP_697182.1\| purine nucleoside phosphorylase [Clostridium perfringens ATCC 13124], ...	4.0E-74	[5..271]	[6..272]
gi\|217963895, gi... - gi\|217963895\|ref\|YP_002349573.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [... gi\|226224558, gi... - gi\|226224558\|ref\|YP_002758665.1\| purine-nucleoside phosphorylase [Listeria monocytogenes Clip81459],... gi\|254871635 - gi\|254871635\|ref\|ZP_05244345.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL N1-017] gi\|254825551 - gi\|254825551\|ref\|ZP_05230552.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL J1-194] gi\|46908187, gi\|... - gi\|46908187\|ref\|YP_014576.1\| purine nucleoside phosphorylase [Listeria monocytogenes str. 4b F2365],... gi\|47093382, gi\|... - gi\|47093382\|ref\|ZP_00231149.1\| purine nucleoside phosphorylase [Listeria monocytogenes str. 4b H7858... gi\|254992938 - gi\|254992938\|ref\|ZP_05275128.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL J2-064]	4.0E-74	[1..272]	[1..272]

Back

Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRELITKSA SYLKEKFQET PQVGLILGSG LGVLADEIEN AVTVPYSEIP EFPVSTVEGH  60
   61 AGQLVFGTLQ GVTVVAMQGR FHFYEGYDMQ KVTFPVRVMK ELGVETVVVT NAAGGVNTSF 120
  121 EPGDLMLISD HINFMGTNPL IGPNDSEMGV RFPDMSTSYT VELREMAKQV AADLNIKVQE 180
  181 GVYVGMTGPV YETPAEIRML RTLGGDAVGM STVPEVIVAR HAGMKVLGIS CISNMAAGIL 240
  241 DQPLHHDEVI ETTERVKANF LALVKAIVKQ MKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1fxuA
Description:	Purine nucleoside phosphorylase, PNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	2.28129906270728	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
binding	1.58090357201399	bayes_pls_golite062009
nicotinamide riboside hydrolase activity	1.38986205931368	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.38135070025071	bayes_pls_golite062009
protein binding	1.28444435808613	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
nucleobase binding	0.914372836742171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: