YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|251802988, gi...
Organism:	Staphylococcus aureus subsp. aureus TCH70
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|251802988, gi....

Description	E-value	Query Range	Subject Range
RL11_OCEIH - 50S ribosomal protein L11 OS=Oceanobacillus iheyensis GN=rplK PE=3 SV=1 RL11_OCEIH - 50S ribosomal protein L11 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT...	206.0	[0..1]	[140..1]
RL11_ALKEH - 50S ribosomal protein L11 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	206.0	[0..1]	[140..1]
RL11_STACT - 50S ribosomal protein L11 OS=Staphylococcus carnosus (strain TM300) GN=rplK PE=3 SV=2 RL11_STACA - 50S ribosomal protein L11 OS=Staphylococcus carnosus GN=rplK PE=3 SV=2	205.0	[0..1]	[140..1]
gi\|88812768, gi\|... - gi\|88812768\|ref\|ZP_01128014.1\| ribosomal protein L11 [Nitrococcus mobilis Nb-231], gi\|88790006\|gb\|EA...	204.0	[0..1]	[140..1]
RL11_THEEB - 50S ribosomal protein L11 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplK PE=3 SV=1 RL11_SYNEL - 50S ribosomal protein L11 OS=Synechococcus elongatus GN=rplK PE=3 SV=1	203.0	[0..1]	[139..1]
RL11_GEOKA - 50S ribosomal protein L11 OS=Geobacillus kaustophilus GN=rplK PE=3 SV=1 gi\|229329196, gi... - gi\|229499917\|ref\|ZP_04393594.1\| ribosomal protein L11 [Geobacillus sp. Y412MC52], gi\|229329196\|gb\|EE... RL11_GEOKA - 50S ribosomal protein L11 OS=Geobacillus kaustophilus (strain HTA426) GN=rplK PE=3 SV=1 gi\|220706735, gi... - gi\|221089309\|ref\|ZP_03558829.1\| ribosomal protein L11 [Geobacillus sp. Y412MC61], gi\|220706735\|gb\|EE...	203.0	[0..1]	[140..1]
RL11A_BACHD, R11... - 50S ribosomal protein L11-1 OS=Bacillus halodurans GN=rplK1 PE=3 SV=1, (Q9KGE6) 50S ribosomal protei... RL11A_BACHD - 50S ribosomal protein L11-1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JC...	202.0	[0..1]	[140..1]
RL11_HALHL - 50S ribosomal protein L11 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplK PE=3 SV=1	202.0	[0..1]	[140..1]
gi\|71903029, gi\|... - gi\|71903029\|ref\|YP_279832.1\| 50S ribosomal protein L11 [Streptococcus pyogenes MGAS6180], gi\|7180212... gi\|50902821, gi\|... - gi\|50913747\|ref\|YP_059719.1\| 50S ribosomal protein L11 [Streptococcus pyogenes MGAS10394], gi\|509028... gi\|94547280, gi\|... - gi\|94993772\|ref\|YP_601870.1\| LSU ribosomal protein L11P [Streptococcus pyogenes MGAS10750], gi\|94547... gi\|94545400, gi\|... - gi\|94991892\|ref\|YP_599991.1\| LSU ribosomal protein L11P [Streptococcus pyogenes MGAS2096], gi\|945454... gi\|94988008, gi\|... - gi\|94988008\|ref\|YP_596109.1\| LSU ribosomal protein L11P [Streptococcus pyogenes MGAS9429], gi\|945415... gi\|94543395, gi\|... - gi\|94989887\|ref\|YP_597987.1\| LSU ribosomal protein L11P [Streptococcus pyogenes MGAS10270], gi\|94543...	201.0	[0..1]	[139..25]
RL11_PEDPA - 50S ribosomal protein L11 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplK PE=3 SV=1	201.0	[0..1]	[140..1]

Back

Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKVDKVVK LQIPAGKANP APPVGPALGQ AGVNIMGFCK EFNARTQDQA GLIIPVEISV  60
   61 YEDRSFTFIT KTPPAPVLLK KAAGIEKGSG EPNKTKVATV TKDQVREIAN SKMQDLNAAD 120
  121 EEAAMRIIEG TARSMGIVVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.154902
Match:	1giyL
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits