YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226840279, gi...
Organism:	Escherichia sp. 1_1_43
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226840279, gi....

Description	E-value	Query Range	Subject Range
gi\|226901738, gi... - gi\|237703826\|ref\|ZP_04534307.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115515630, gi... - gi\|117626506\|ref\|YP_859829.1\| hypothetical protein APECO1_2232 [Escherichia coli APEC O1], gi\|115515... gi\|218368088, gi... - gi\|218561319\|ref\|YP_002394232.1\| hypothetical protein ECS88_4745 [Escherichia coli S88], gi\|21836808... gi\|91213709, gi\|... - gi\|91213709\|ref\|YP_543695.1\| hypothetical protein UTI89_C4757 [Escherichia coli UTI89], gi\|91075283\|...	213.0	[0..1]	[102..1]
gi\|213646515 - gi\|213646515\|ref\|ZP_03376568.1\| hypothetical protein SentesTy_03823 [Salmonella enterica subsp. ente... gi\|213850081 - gi\|213850081\|ref\|ZP_03380979.1\| hypothetical protein SentesT_00165 [Salmonella enterica subsp. enter... gi\|56130398, gi\|... - gi\|56416141\|ref\|YP_153216.1\| hypothetical protein SPA4163 [Salmonella enterica subsp. enterica serov... gi\|197365067, gi... - gi\|197365067\|ref\|YP_002144704.1\| hypothetical protein SSPA3867 [Salmonella enterica subsp. enterica ... gi\|213052292 - gi\|213052292\|ref\|ZP_03345170.1\| hypothetical protein Salmoneentericaenterica_04777 [Salmonella enter... gi\|213428684 - gi\|213428684\|ref\|ZP_03361434.1\| hypothetical protein SentesTyphi_26041 [Salmonella enterica subsp. e... gi\|213585794 - gi\|213585794\|ref\|ZP_03367620.1\| hypothetical protein SentesTyph_32802 [Salmonella enterica subsp. en... gi\|29144647, gi\|... - gi\|29144647\|ref\|NP_807989.1\| hypothetical protein t4398 [Salmonella enterica subsp. enterica serovar... gi\|25332671, gi\|... - gi\|25332671\|pir\|\|AE1047 conserved hypothetical protein yjeN [imported] - Salmonella enterica subsp. ... gi\|16763168 - gi\|16763168\|ref\|NP_458785.1\| hypothetical protein STY4706 [Salmonella enterica subsp. enterica serov...	196.0	[0..1]	[102..20]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDTSRDPAI TEDEIRALQF SAGDVAEIEQ TILSFVDACH TRKVAMVVGS TINTLKDRDG  60
   61 KRWGNLPDIY CAYLIRCLVF RGELVGYGDL FRMRYSEIKR PVTL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits