YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229332534, gi...
Organism:	Vibrio cholerae 12129(1)
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229332534, gi....

Description	E-value	Query Range	Subject Range
tr\|D7HE21\|D7HE21... - Hydroxyacylglutathione hydrolase OS=Vibrio cholerae RC385 GN=gloB PE=3 SV=1 gi\|116218207, gi... - gi\|75824349\|ref\|ZP_00753806.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Vibrio chole...	265.0	[0..1]	[252..1]
gi\|254225773, gi... - gi\|75820871\|ref\|ZP_00750909.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Vibrio chole...	264.0	[0..1]	[252..1]
GLO2_VIBPA - Hydroxyacylglutathione hydrolase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=... gi\|149746730, gi... - gi\|153839746\|ref\|ZP_01992413.1\| hydroxyacylglutathione hydrolase [Vibrio parahaemolyticus AQ3810], g... GLO2_VIBPA - Hydroxyacylglutathione hydrolase OS=Vibrio parahaemolyticus GN=gloB PE=3 SV=1	259.0	[0..1]	[252..1]
gi\|91223497, gi\|... - gi\|91223497\|ref\|ZP_01258762.1\| putative hydroxyacylglutathione hydrolase GloB [Vibrio alginolyticus ...	258.0	[0..1]	[252..1]
GLO2_VIBVU - Hydroxyacylglutathione hydrolase OS=Vibrio vulnificus GN=gloB PE=3 SV=1 GLO22_VIBVY - Hydroxyacylglutathione hydrolase 2 OS=Vibrio vulnificus (strain YJ016) GN=gloB2 PE=3 SV=1 GLO2_VIBVU - Hydroxyacylglutathione hydrolase OS=Vibrio vulnificus (strain CMCP6) GN=gloB PE=3 SV=1	255.0	[0..1]	[252..1]
gi\|75856799, gi\|... - gi\|75856799\|ref\|ZP_00764422.1\| COG0491: Zn-dependent hydrolases, including glyoxylases [Vibrio sp. E...	254.0	[0..2]	[252..9]
gi\|90437139, gi\|... - gi\|90581655\|ref\|ZP_01237444.1\| putative hydroxyacylglutathione hydrolase GloB [Vibrio angustum S14],...	249.0	[0..1]	[252..1]
gi\|89075028, gi\|... - gi\|89075028\|ref\|ZP_01161473.1\| putative hydroxyacylglutathione hydrolase GloB [Photobacterium sp. SK...	248.0	[0..1]	[252..1]
gi\|59712545, gi\|... - gi\|59712545\|ref\|YP_205321.1\| hydroxyacylglutathione hydrolase [Vibrio fischeri ES114], gi\|59480646\|g...	246.0	[0..1]	[252..1]
gi\|86146866, gi\|... - gi\|86146866\|ref\|ZP_01065185.1\| Hydroxyacylglutathione hydrolase GloB [Vibrio sp. MED222], gi\|8583531...	244.0	[0..1]	[252..1]

Back

Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQIKSIPAF DDNYIWLIQN RDRDCAVVDP GSAEPVLAYL KQHDLNLKAV LITHHHHDHI  60
   61 GGVAELVHQF PEIHVVGPAQ EPIPTLTHPV EDGDQIELFD ERFMVLGLPG HTLGHIGYVG 120
  121 DGKLFCGDVL FSAGCGRVFE GTMEQMFSSL NKLLSLPEET QVYSAHEYTA ANVAFALAVE 180
  181 PENEQLHIYR DEVSRLRAQN QPTLPTTLGR EKWVNPFLRT QEPSVIRSVA SQVSTLDPLT 240
  241 IFTALREWKN EF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	2qedA
Description:	No description for 2qedA was found.

Predicted functions:

Term	Confidence	Notes
hydroxyacylglutathione hydrolase activity	3.53012507604564	bayes_pls_golite062009
catalytic activity	0.941400907161877	bayes_pls_golite062009
binding	0.900972948435178	bayes_pls_golite062009
thiolester hydrolase activity	0.802604883362264	bayes_pls_golite062009
hydrolase activity	0.021392930321391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: