YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238861344, gi...
Organism:	Escherichia coli BW2952
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238861344, gi....

Description	E-value	Query Range	Subject Range
gi\|77974562, gi\|... - gi\|77974562\|ref\|ZP_00830101.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia frederik...	486.0	[0..1]	[471..1]
SYE_YERPY - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gltX PE=3 SV=1 SYE_YERP3 - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gltX PE=3 S...	485.0	[0..1]	[471..1]
gi\|238792027, gi... - gi\|77979154\|ref\|ZP_00834575.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia intermed...	484.0	[0..1]	[471..1]
SYE_YERPB - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gltX PE=3 SV=1 SYE_YERPS - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis GN=gltX PE=3 SV=1 SYE_YERPS - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=gltX PE=3 SV=1	484.0	[0..1]	[471..1]
gi\|77956833, gi\|... - gi\|77956833\|ref\|ZP_00820909.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia bercovie...	484.0	[0..1]	[471..1]
gi\|149291564, gi... - gi\|149365151\|ref\|ZP_01887186.1\| glutamyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|149291564\|g... SYE_YERPP - Glutamate--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=gltX PE=3 SV=1 gi\|45437250, gi\|... - gi\|45442386\|ref\|NP_993925.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22125395, gi\|... - gi\|22125395\|ref\|NP_668818.1\| glutamyl-tRNA synthetase [Yersinia pestis KIM], gi\|21958280\|gb\|AAM85069... gi\|16123165, gi\|... - gi\|218930033\|ref\|YP_002347908.1\| glutamyl-tRNA synthetase [Yersinia pestis CO92], gi\|16123165\|ref\|NP... SYE_YERPG - Glutamate--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gltX PE=3 SV=1 SYE_YERPE - Glutamate--tRNA ligase OS=Yersinia pestis GN=gltX PE=3 SV=1 gi\|229694941, gi... - gi\|229838575\|ref\|ZP_04458734.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEX... gi\|229895643, gi... - gi\|229895643\|ref\|ZP_04510814.1\| glutamyl-tRNA synthetase [Yersinia pestis Pestoides A], gi\|229701449... gi\|229899141, gi... - gi\|229899141\|ref\|ZP_04514284.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. Ind... gi\|165989927, gi... - gi\|166011249\|ref\|ZP_02232147.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E19790... gi\|165926928, gi... - gi\|165926928\|ref\|ZP_02222760.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F19... gi\|167398458, gi... - gi\|167398458\|ref\|ZP_02303982.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|166206452, gi... - gi\|166212521\|ref\|ZP_02238556.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003... SYE_YERPA - Glutamate--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gltX PE=3 SV=1 gi\|167424635, gi... - gi\|167424635\|ref\|ZP_02316388.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1... SYE_YERPN - Glutamate--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gltX PE=3 SV=1 gi\|167421386, gi... - gi\|167421386\|ref\|ZP_02313139.1\| glutamyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG0...	483.0	[0..1]	[471..1]
gi\|238799229, gi... - gi\|77960940\|ref\|ZP_00824792.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia mollaret...	482.0	[0..1]	[471..1]
SYE_PECAS - Glutamate--tRNA ligase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=gltX PE=3... SYE_ERWCT - Glutamate--tRNA ligase OS=Erwinia carotovora subsp. atroseptica GN=gltX PE=3 SV=1	482.0	[0..1]	[471..1]
gi\|191173782, gi... - gi\|75237962\|ref\|ZP_00721969.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Escherichia coli ... SYE_ECOL5 - Glutamate--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gltX PE=3 SV=1	481.0	[0..1]	[471..1]
SYE_ECOL6 - Glutamate--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=gltX PE=3 S... gi\|218690541, gi... - gi\|218690541\|ref\|YP_002398753.1\| glutamyl-tRNA synthetase [Escherichia coli ED1a], gi\|218428105\|emb\|... gi\|218700867, gi... - gi\|218700867\|ref\|YP_002408496.1\| glutamyl-tRNA synthetase [Escherichia coli IAI39], gi\|218370853\|emb... gi\|227835797, gi... - gi\|227887447\|ref\|ZP_04005252.1\| glutamyl-tRNA synthetase [Escherichia coli 83972], gi\|227835797\|gb\|E... SYE_ECOL6 - Glutamate--tRNA ligase OS=Escherichia coli O6 GN=gltX PE=3 SV=1 gi\|215487659, gi... - gi\|215487659\|ref\|YP_002330090.1\| glutamyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69], ...	480.0	[0..1]	[471..1]

Back

Predicted Domain #1

Region A:
Residues: [1-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKTRFAPS PTGYLHVGGA RTALYSWLFA RNHGGEFVLR IEDTDLERST PEAIEAIMDG  60
   61 MNWLSLEWDE GPYYQTKRFD RYNAVIDQML EEGTAYKCYC SKERLEALRE EQMAKGEKPR 120
  121 YDGRCRHSHE HHADDEPCVV RFANPQEGSV VFDDQIRGPI EFSNQELDDL IIRRTDGSPT 180
  181 YNFCVVVDDW DMEITHVIRG EDHINNTPRQ INILKALKAP VPVYAHVSMI NGDDGKKLSK 240
  241 RHGAVSVMQY RDDGYLPEAL LNYLVRLGWS HGDQEIFTRE EMIKYFTLNA VSKSASAFNT 300
  301 DKLLWLNHHY INALPPEYVA THLQWHIEQE NIDTRNGPQL ADLVKLLGER CKTLKEMAQS 360
  361 CRYFYEDFAE FDADAAKKHL RPVARQPLEV VRDKLAAITD WTAENVHHAI QATADELEVG 420
  421 MGKVGMPLRV AVTGAGQSPA LDVTVHAIGK TRSIERINKA LDFIAERENQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	2cfoA
Description:	No description for 2cfoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits