YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227815860, gi...
Organism:	Bacillus anthracis str. CDC 684
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227815860, gi....

Description	E-value	Query Range	Subject Range
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	1.0E-67	[1..223]	[1..223]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	4.0E-67	[1..223]	[1..223]
gi\|163939206, gi... - gi\|89204474\|ref\|ZP_01183051.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	4.0E-67	[1..223]	[1..223]
gi\|49477181, gi\|... - gi\|49477181\|ref\|YP_035526.1\| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27...	6.0E-67	[1..223]	[1..223]
gi\|225785753, gi... - gi\|225863261\|ref\|YP_002748639.1\| DNA-binding response regulator [Bacillus cereus 03BB102], gi\|225785... gi\|52144036, gi\|... - gi\|52144036\|ref\|YP_082792.1\| response regulator [Bacillus cereus E33L], gi\|51977505\|gb\|AAU19055.1\| r... gi\|118416098, gi... - gi\|118476873\|ref\|YP_894024.1\| response regulator [Bacillus thuringiensis str. Al Hakam], gi\|11841609... gi\|218902506, gi... - gi\|218902506\|ref\|YP_002450340.1\| DNA-binding response regulator [Bacillus cereus AH820], gi\|21853851... gi\|254726203 - gi\|254726203\|ref\|ZP_05187985.1\| DNA-binding response regulator [Bacillus anthracis str. A1055] gi\|196022663, gi... - gi\|196046479\|ref\|ZP_03113704.1\| DNA-binding response regulator [Bacillus cereus 03BB108], gi\|1960226... gi\|196040638, gi... - gi\|196040638\|ref\|ZP_03107937.1\| DNA-binding response regulator [Bacillus cereus NVH0597-99], gi\|1960... gi\|195992031, gi... - gi\|196035354\|ref\|ZP_03102759.1\| DNA-binding response regulator [Bacillus cereus W], gi\|195992031\|gb\|...	6.0E-67	[1..223]	[1..223]
gi\|29894995, gi\|... - gi\|30019451\|ref\|NP_831082.1\| two-component response regulator [Bacillus cereus ATCC 14579], gi\|29894... gi\|218164030, gi... - gi\|218236073\|ref\|YP_002366082.1\| DNA-binding response regulator [Bacillus cereus B4264], gi\|21816403...	1.0E-66	[1..223]	[1..223]
gi\|152023577, gi... - gi\|89200931\|ref\|ZP_01179680.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	5.0E-65	[1..223]	[1..223]
gi\|98660596 - gi\|98660596\|dbj\|GAA02177.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	4.0E-64	[1..223]	[3..228]
gi\|82402957, gi\|... - gi\|82499061\|ref\|ZP_00884513.1\| Response regulator receiver [Caldicellulosiruptor saccharolyticus DSM...	1.0E-63	[4..223]	[1..223]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	6.0E-63	[4..221]	[5..227]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKYRVLVVD DESDMRQLVG MYLDNFGYEW GEAENGKEAL KKLETDHYDF VVLDIMMPEM  60
   61 DGLSVCKEIR KTSDVPIIFL TAKGEEWNRV NGLRMGADDY IVKPFSPGEL IARMEAVLRR 120
  121 YTKQEQQEEI QFGPILINEK SRKIEADGEP ISLTVKEFDL LYFLCQHTGQ VFSREQLLEK 180
  181 VWGYDYAGST RTVDTHVKTM RLKLGEGGNY IQTVWGVGYK FEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.09691
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits