YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229838025, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229838025, gi....

Description	E-value	Query Range	Subject Range
gi\|82776968, gi\|... - gi\|82776968\|ref\|YP_403317.1\| hypothetical protein SDY_1706 [Shigella dysenteriae Sd197], gi\|81241116...	3.0E-75	[1..374]	[1..374]
gi\|195937490 - gi\|195937490\|ref\|ZP_03082872.1\| 2Fe-2S cluster-containing protein [Escherichia coli O157:H7 str. EC4... gi\|208725224, gi... - gi\|208810708\|ref\|ZP_03252584.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4206],... gi\|208731058, gi... - gi\|208816715\|ref\|ZP_03257835.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4045],... gi\|208819829, gi... - gi\|208819829\|ref\|ZP_03260149.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4042],... gi\|209159083, gi... - gi\|209397683\|ref\|YP_002270879.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4115]... gi\|209919167, gi... - gi\|209919167\|ref\|YP_002293251.1\| putative dioxygenase alpha subunit [Escherichia coli SE11], gi\|2099... gi\|217318284, gi... - gi\|217328937\|ref\|ZP_03445018.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. TW14588]... gi\|218695364, gi... - gi\|218695364\|ref\|YP_002403031.1\| putative 2Fe-2S cluster-containing dioxygenase subunit [Escherichia... gi\|189355020, gi... - gi\|189355020\|gb\|EDU73439.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|189365719, gi... - gi\|189365719\|gb\|EDU84135.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189360339, gi... - gi\|189360339\|gb\|EDU78758.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|168774883, gi... - gi\|187769372\|gb\|EDU33216.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|189000302, gi... - gi\|189000302\|gb\|EDU69288.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|189371970, gi... - gi\|189371970\|gb\|EDU90386.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|168801035, gi... - gi\|189376727\|gb\|EDU95143.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC508], gi\|1... YEAW_ECOLI - Putative dioxygenase subunit alpha yeaW (EC 1.14.-.-) - Escherichia coli gi\|169889293, gi... - gi\|170081458\|ref\|YP_001730778.1\| 2Fe-2S cluster-containing protein [Escherichia coli str. K-12 subst... gi\|194421427, gi... - gi\|83584987\|ref\|ZP_00923642.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|15831765, gi\|... - gi\|15831765\|ref\|NP_310538.1\| hypothetical protein ECs2511 [Escherichia coli O157:H7 str. Sakai], gi\|... EG13509 - putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster / Predicted YeaWX dioxygenase alpha subunit... gi\|74311886, gi\|... - gi\|74311886\|ref\|YP_310305.1\| hypothetical protein SSON_1359 [Shigella sonnei Ss046], gi\|73855363\|gb\|... gi\|85675129, gi\|... - gi\|89108641\|ref\|AP_002421.1\| predicted 2Fe-2S cluster-containing protein [Escherichia coli str. K-12... gi\|168749368, gi... - gi\|188016306\|gb\|EDU54428.1\| Rieske 2Fe-2S domain protein [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|254793424, gi... - gi\|254793424\|ref\|YP_003078261.1\| predicted 2Fe-2S cluster-containing protein [Escherichia coli O157:... YEAW_ECO57 - Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7 GN=yeaW PE=3 SV=1 gi\|253973762, gi... - gi\|254161861\|ref\|YP_003044969.1\| predicted 2Fe-2S cluster-containing protein [Escherichia coli B str... gi\|157154831, gi... - gi\|75190832\|ref\|ZP_00704099.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|253324289, gi... - gi\|254288649\|ref\|YP_003054397.1\| predicted 2Fe-2S cluster-containing protein [Escherichia coli BL21(... gi\|15802215, gi\|... - gi\|15802215\|ref\|NP_288238.1\| hypothetical protein Z2845 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|251785250, gi... - gi\|251785250\|ref\|YP_002999554.1\| hypothetical protein B21_01760 [Escherichia coli BL21], gi\|24237752... EG13509 - putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster / Predicted YeaWX dioxygenase alpha subunit... gi\|238862095, gi... - gi\|238901016\|ref\|YP_002926812.1\| putative 2Fe-2S cluster-containing protein [Escherichia coli BW2952... gi\|190901130, gi... - gi\|75227936\|ref\|ZP_00714636.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|188490866, gi... - gi\|75513701\|ref\|ZP_00736077.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|157066946, gi... - gi\|75195868\|ref\|ZP_00705938.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|75215163, gi\|... - gi\|75215163\|ref\|ZP_00713608.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	4.0E-75	[1..374]	[1..374]
gi\|193066364, gi... - gi\|75255571\|ref\|ZP_00727358.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	6.0E-75	[1..374]	[1..374]
gi\|75208734, gi\|... - gi\|75208734\|ref\|ZP_00709026.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	7.0E-75	[1..374]	[1..374]
gi\|82543795, gi\|... - gi\|82543795\|ref\|YP_407742.1\| hypothetical protein SBO_1286 [Shigella boydii Sb227], gi\|81245206\|gb\|A... gi\|187428150, gi... - gi\|75177269\|ref\|ZP_00697358.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ...	9.0E-75	[1..374]	[1..374]
gi\|77633302 - gi\|77633302\|ref\|ZP_00795440.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|89102203 - gi\|89102203\|ref\|ZP_01174855.1\| COG4638: Phenylpropionate dioxygenase and related ring-hydroxylating ... gi\|45442098, gi\|... - gi\|45442098\|ref\|NP_993637.1\| putative dioxygenase alpha subunit [Yersinia pestis biovar Microtus str...	1.0E-73	[1..374]	[29..402]
gi\|113867943, gi... - gi\|113867943\|ref\|YP_726432.1\| benzoate 1,2-dioxygenase hydroxylase subunit alpha [Ralstonia eutropha...	3.0E-69	[7..372]	[19..450]
gi\|2822265 - gi\|2822265\|gb\|AAC03436.1\| isopropylbenzene dioxygenase, iron-sulfur protein, large subunit [Pseudomo...	4.0E-68	[8..374]	[21..451]
gi\|41326586, gi\|... - gi\|62391246\|ref\|YP_226648.1\| benzoate 1,2-dioxygenase subunit alpha [Corynebacterium glutamicum ATCC...	9.0E-68	[9..374]	[14..446]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQHPDFVL PKDFCANPRE AYTIPAYFYT QQAAFEHEKE RVFTNSWICM AHGSEVAQPN  60
   61 DYITREIIGE NIVIVRGRDS VLRAFYNVCP HRGHQLLSGE GKAKNVITCP YHAWTFKLDG 120
  121 ELAHARNCEN VTNFDKDRAT LFPVRLEEYA GFIFINMNPD AESVEQQLPG LQDKVFEACP 180
  181 DVHELKLAAR FTTRTPANWK NIVDNYMECY HCEPAHPGFA DSVQIDRYWH TMHGNWSLQF 240
  241 GYAKPSEKSF KFEEGEESSF HGFWLWPCSM FNVPPLKGMM TVIYEFPVDA ETTLQNYDIY 300
  301 FTNEELTEDQ KALIEWYRNV FRPEDLRLVE SVQKGLKSRG YRGQGRIMAD DKGSGISEHG 360
  361 IAHFHNLVAK VFQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.221849
Match:	1uliA
Description:	Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.21668272655872	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: