YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229120713, gi...
Organism:	Bacillus cereus 95/8201
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229120713, gi....

Description	E-value	Query Range	Subject Range
gi\|228656885, gi... - gi\|229126496\|ref\|ZP_04255510.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus BDRD-C... gi\|229108652, gi... - gi\|229108652\|ref\|ZP_04238263.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus Rock1-... gi\|228957464, gi... - gi\|228957464\|ref\|ZP_04119218.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus thuringiensis... gi\|29894784, gi\|... - gi\|30019241\|ref\|NP_830872.1\| lipoate-protein ligase A [Bacillus cereus ATCC 14579], gi\|29894784\|gb\|A...	0.0	[1..329]	[1..329]
gi\|228693220, gi... - gi\|229090143\|ref\|ZP_04221393.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus Rock3-... gi\|51977692, gi\|... - gi\|52144223\|ref\|YP_082605.1\| lipoate-protein ligase A [Bacillus cereus E33L], gi\|51977692\|gb\|AAU1924... gi\|217958670, gi... - gi\|217958670\|ref\|YP_002337218.1\| putative lipoate-protein ligase A [Bacillus cereus AH187], gi\|21706... gi\|206745219, gi... - gi\|206976536\|ref\|ZP_03237442.1\| putative lipoate-protein ligase A [Bacillus cereus H3081.97], gi\|206... gi\|228588099, gi... - gi\|229195400\|ref\|ZP_04322169.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus m1293]... gi\|196037699, gi... - gi\|196037699\|ref\|ZP_03105010.1\| putative lipoate-protein ligase A [Bacillus cereus NVH0597-99], gi\|1... gi\|228645535, gi... - gi\|229137878\|ref\|ZP_04266477.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus BDRD-S...	0.0	[1..329]	[1..329]
gi\|42736183, gi\|... - gi\|42780264\|ref\|NP_977511.1\| lipoate-protein ligase A, putative [Bacillus cereus ATCC 10987], gi\|427...	0.0	[1..329]	[1..329]
gi\|218545470, gi... - gi\|218896140\|ref\|YP_002444551.1\| putative lipoate-protein ligase A [Bacillus cereus G9842], gi\|21854... gi\|228904013, gi... - gi\|228904013\|ref\|ZP_04068119.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus thuringiensis... gi\|74493138, gi\|... - gi\|75759371\|ref\|ZP_00739467.1\| Lipoate-protein ligase A [Bacillus thuringiensis serovar israelensis ... gi\|228795496, gi... - gi\|228964146\|ref\|ZP_04125269.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus thuringiensis...	0.0	[1..329]	[1..329]
gi\|221313187 - gi\|221313187\|ref\|ZP_03594992.1\| hypothetical protein BsubsN3_05622 [Bacillus subtilis subsp. subtili... LPLJ_BACSU - Lipoate-protein ligase LplJ OS=Bacillus subtilis (strain 168) GN=lplJ PE=1 SV=1 gi\|221322385 - gi\|221322385\|ref\|ZP_03603679.1\| hypothetical protein BsubsS_05677 [Bacillus subtilis subsp. subtilis... gi\|221318110 - gi\|221318110\|ref\|ZP_03599404.1\| hypothetical protein BsubsJ_05571 [Bacillus subtilis subsp. subtilis... LPLJ_BACSU, LPLA... - Lipoate-protein ligase LplJ OS=Bacillus subtilis GN=lplJ PE=1 SV=1, Putative lipoate-protein ligase ...	0.0	[1..329]	[1..331]
gi\|152023404, gi... - gi\|89201729\|ref\|ZP_01180465.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus subsp. ...	0.0	[1..329]	[1..329]
gi\|89156434, gi\|... - gi\|89205640\|ref\|ZP_01184208.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus weihenstephane... gi\|229131993, gi... - gi\|229131993\|ref\|ZP_04260856.1\| Lipoyltransferase and lipoate-protein ligase [Bacillus cereus BDRD-S...	0.0	[1..329]	[1..329]
gi\|47555758, gi\|... - gi\|47567563\|ref\|ZP_00238274.1\| lipoate-protein ligase A [Bacillus cereus G9241], gi\|47555758\|gb\|EAL1...	0.0	[1..329]	[1..329]
gi\|25293701 - pir\|\|C83735 lipoate-protein ligase lplA [imported] - Bacillus halodurans (strain C-125) gi\|10173297, gi\|... - gi\|15613246\|ref\|NP_241549.1\| lipoate-protein ligase [Bacillus halodurans C-125], gi\|10173297\|dbj\|BAB...	0.0	[1..329]	[1..330]
gi\|56963378, gi\|... - gi\|56963378\|ref\|YP_175109.1\| lipoate-protein ligase [Bacillus clausii KSM-K16], gi\|56909621\|dbj\|BAD6...	0.0	[1..329]	[1..330]

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Predicted Domain #1

Region A:
Residues: [1-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFIDNKGIT DPRINLAIEE YCVKNLDINE TYLLFYINEP SIIIGKNQNT VEEINADYVK  60
   61 EKGIHVVRRL SGGGAVYHDL GNLNFSFITK DDGDSFSNFK KFTEPVTKAL GKLGVNAELS 120
  121 GRNDILAEGR KISGNAQFST KGRMFSHGTL LFDSEIDHVV SALKVKMDKI QSKGIKSIRS 180
  181 RVANITEFLN EEMTTEEFRQ LLLETIFEGE TEIPTYELTE EDWKEIHKLS EERYRNWDWN 240
  241 YGKSPKFNLQ HSHRFPVGQV DVRLEVKKGT VTECKIYGDF FGSLDVHDIE ERLTGVQFDK 300
  301 DAFTTALEGV DIARYFGNIT TEDFLHLFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	1vqzA
Description:	Crystal structure of putative Lipoate-protein ligase (np_345629.1) from Streptococcus pneumoniae tigr4 at 1.99 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.33073922220594	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.33073922220594	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.33034630936933	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: