YRC Public Data Repository - Protein Structure Prediction

Protein:	Y2278_VIBCM
Organism:	Vibrio cholerae M66-2
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2278_VIBCM.

Description	E-value	Query Range	Subject Range
gi\|37197584, gi\|... - gi\|37678843\|ref\|NP_933452.1\| hypothetical protein VV0659 [Vibrio vulnificus YJ016], gi\|37197584\|dbj\|...	402.0	[0..1]	[257..27]
Y535_VIBVU - UPF0246 protein VV1_0535 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_0535 PE=3 SV=1 Y535_VIBVU - UPF0246 protein VV1_0535 OS=Vibrio vulnificus GN=VV1_0535 PE=3 SV=1	400.0	[0..1]	[257..1]
gi\|116183442, gi... - gi\|75853930\|ref\|ZP_00761667.1\| COG3022: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	399.0	[0..1]	[257..1]
gi\|90438246, gi\|... - gi\|90580588\|ref\|ZP_01236393.1\| hypothetical protein VAS14_07659 [Vibrio angustum S14], gi\|90438246\|g...	399.0	[0..1]	[257..1]
gi\|89051631, gi\|... - gi\|89072527\|ref\|ZP_01159099.1\| hypothetical protein SKA34_18419 [Photobacterium sp. SKA34], gi\|89051...	397.0	[0..1]	[257..1]
gi\|91188922, gi\|... - gi\|91226791\|ref\|ZP_01261444.1\| hypothetical protein V12G01_13479 [Vibrio alginolyticus 12G01], gi\|91...	397.0	[0..1]	[257..1]
Y561_PHOPR - UPF0246 protein PBPRA0561 OS=Photobacterium profundum GN=PBPRA0561 PE=3 SV=1 Y561_PHOPR - UPF0246 protein PBPRA0561 OS=Photobacterium profundum (strain SS9) GN=PBPRA0561 PE=3 SV=1	395.0	[0..1]	[257..1]
Y504_VIBPA - UPF0246 protein VP0504 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0504 PE=... Y504_VIBPA - UPF0246 protein VP0504 OS=Vibrio parahaemolyticus GN=VP0504 PE=3 SV=1	394.0	[0..1]	[257..1]
gi\|90325866, gi\|... - gi\|90413175\|ref\|ZP_01221171.1\| hypothetical protein P3TCK_13720 [Photobacterium profundum 3TCK], gi\|...	392.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIVVSPAKT LDYESPVSTS NFTQPELTAH SAELIQVCRT LSSQDVSELM SVSDKIAGLN  60
   61 VARFAQWSET F

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLDNARQAIF AFKGDVYTGL EAETLSPQDL DFAQQHLRML SGLYGVLRPL DLMQPYRLEM  60
   61 GTKLANARGA NLYQF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [147-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WGDIITEKLN QAIEAQGDNV LVNLASNEYF KAVNPKRLNA QIVTPIFKDA KNGQYKIISF  60
   61 FAKKARGMMA RYIIENRIKS VKDLEGFNTA GYYFVASEST PTELVFKREE Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits