YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229705786, gi...
Organism:	Yersinia pestis Pestoides A
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229705786, gi....

Description	E-value	Query Range	Subject Range
gi\|22124092, gi\|... - gi\|22124092\|ref\|NP_667515.1\| hypothetical protein y0172 [Yersinia pestis KIM], gi\|21956842\|gb\|AAM837... gi\|45438453, gi\|... - gi\|45443583\|ref\|NP_995122.1\| hypothetical protein YP_3853 [Yersinia pestis biovar Microtus str. 9100...	5.0E-65	[1..182]	[3..184]
Y3542_YERPS - UPF0307 protein YPTB3542 OS=Yersinia pseudotuberculosis GN=YPTB3542 PE=3 SV=1 Y489_YERPY - UPF0307 protein YPK_0489 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_0489 PE=3... Y3728_YERPB - UPF0307 protein YPTS_3728 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3728 PE=... Y3542_YERPS - UPF0307 protein YPTB3542 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3542 PE=3... Y425_YERP3 - UPF0307 protein YpsIP31758_0425 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp...	6.0E-65	[1..182]	[1..182]
gi\|77958836, gi\|... - gi\|77958836\|ref\|ZP_00822863.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia berc...	1.0E-64	[1..182]	[1..182]
gi\|77973442, gi\|... - gi\|77973442\|ref\|ZP_00828990.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia fred...	6.0E-64	[1..182]	[1..182]
gi\|238797947, gi... - gi\|77959993\|ref\|ZP_00823898.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia moll...	3.0E-63	[1..182]	[1..182]
gi\|238726983, gi... - gi\|77978735\|ref\|ZP_00834160.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia inte...	6.0E-63	[1..182]	[1..182]
Y4061_PHOLL - UPF0307 protein plu4061 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ... Y4061_PHOLL, Y4G... - (Q7N042) Hypothetical UPF0307 protein plu4061, UPF0307 protein plu4061 OS=Photorhabdus luminescens s...	9.0E-61	[1..180]	[1..178]
YJGA_SHIDS - UPF0307 protein YjgA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yjgA PE=3 SV=1	3.0E-60	[1..181]	[1..180]
Y281_PECAS - UPF0307 protein ECA0281 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA0281 ... Y281_ERWCT - UPF0307 protein ECA0281 OS=Erwinia carotovora subsp. atroseptica GN=ECA0281 PE=3 SV=1	2.0E-59	[1..180]	[1..181]
YJGA_SALPA - UPF0307 protein YjgA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yjgA PE=3 SV=1 YJGA_SALPA - UPF0307 protein yjgA OS=Salmonella paratyphi A GN=yjgA PE=3 SV=1 YJGA_SALPK - UPF0307 protein YjgA OS=Salmonella paratyphi A (strain AKU_12601) GN=yjgA PE=3 SV=1	2.0E-58	[1..181]	[1..182]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQPEDWLD DVPENKNDDD DEIIWVSKSE IKRDAEALKD LGTELVDLGK NALERIPLDE  60
   61 DLLAAIELAQ KIKKEGRRRQ LQLIGKMLRA RDVEPIQTAL DKLKNRHNQQ ISLFHKLETL 120
  121 RDRLIAEGDE AIPTVLELYP DADRQQLRSL VRNAQKEQAA NKPPKSFRQI FSYLRELAEK 180
  181 KQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2p0tA
Description:	No description for 2p0tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits