YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227883548, gi...
Organism:	Escherichia coli 83972
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227883548, gi....

Description	E-value	Query Range	Subject Range
GNTY_ERWCT, NFUA... - Fe/S biogenesis protein nfuA OS=Erwinia carotovora subsp. atroseptica GN=nfuA PE=3 SV=1, Protein gnt... NFUA_PECAS - Fe/S biogenesis protein NfuA OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=nfu...	194.0	[0..1]	[191..1]
gi\|238788981, gi... - gi\|77975063\|ref\|ZP_00830600.1\| COG0316: Uncharacterized conserved protein [Yersinia frederiksenii AT...	193.0	[0..1]	[191..1]
NFUA_SODGM - Fe/S biogenesis protein NfuA OS=Sodalis glossinidius (strain morsitans) GN=nfuA PE=3 SV=1	192.0	[0..1]	[191..1]
gi\|238792866, gi... - gi\|77978690\|ref\|ZP_00834116.1\| COG0316: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	191.0	[0..1]	[191..1]
gi\|238786223, gi... - gi\|77956411\|ref\|ZP_00820512.1\| COG0316: Uncharacterized conserved protein [Yersinia bercovieri ATCC ... gi\|238718947, gi... - gi\|77962663\|ref\|ZP_00826480.1\| COG0316: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	191.0	[0..1]	[191..1]
gi\|229690373, gi... - gi\|229842063\|ref\|ZP_04462218.1\| predicted gluconate transport associated protein [Yersinia pestis bi... gi\|229696348, gi... - gi\|229839982\|ref\|ZP_04460141.1\| predicted gluconate transport associated protein [Yersinia pestis bi... gi\|229706461, gi... - gi\|229836393\|ref\|ZP_04456560.1\| predicted gluconate transport associated protein [Yersinia pestis Pe... NFUA_YERPS, GNTY... - Fe/S biogenesis protein nfuA OS=Yersinia pseudotuberculosis GN=nfuA PE=3 SV=1, Protein gntY - Yersin... NFUA_YERPE - Fe/S biogenesis protein NfuA OS=Yersinia pestis GN=nfuA PE=3 SV=1 NFUA_YERPP - Fe/S biogenesis protein NfuA OS=Yersinia pestis (strain Pestoides F) GN=nfuA PE=3 SV=1 gi\|149290217, gi... - gi\|150260809\|ref\|ZP_01917537.1\| predicted gluconate transport associated protein [Yersinia pestis CA... NFUA_YERPG - Fe/S biogenesis protein NfuA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=nfuA PE=3 SV=1 NFUA_YERPN - Fe/S biogenesis protein NfuA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nfuA PE=3 SV=1 NFUA_YERP3 - Fe/S biogenesis protein NfuA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nfuA ... gi\|165936266, gi... - gi\|89105824\|ref\|ZP_01178337.1\| COG0316: Uncharacterized conserved protein [Yersinia pestis biovar Or... NFUA_YERPA - Fe/S biogenesis protein NfuA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nfuA PE=3 SV=1 gi\|22127773, gi\|... - gi\|22127773\|ref\|NP_671196.1\| putative DNA uptake protein [Yersinia pestis KIM], gi\|21960901\|gb\|AAM87... NFUA_YERPS - Fe/S biogenesis protein NfuA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=nfuA PE=3... gi\|45439990, gi\|... - gi\|45439990\|ref\|NP_991529.1\| putative DNA uptake protein [Yersinia pestis biovar Microtus str. 91001... gi\|218927338, gi... - gi\|218927338\|ref\|YP_002345213.1\| putative DNA uptake protein [Yersinia pestis CO92], gi\|16120470\|ref... gi\|167426539, gi... - gi\|167426539\|ref\|ZP_02318292.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Me... gi\|167468684 - gi\|167468684\|ref\|ZP_02333388.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis FV-1] NFUA_YERPY - Fe/S biogenesis protein NfuA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nfuA PE=3... NFUA_YERPB - Fe/S biogenesis protein NfuA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=nfuA PE=3 ... gi\|165928048, gi... - gi\|165928048\|ref\|ZP_02223880.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Or... gi\|165990521, gi... - gi\|166010431\|ref\|ZP_02231329.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar An... gi\|166204234, gi... - gi\|166214579\|ref\|ZP_02240614.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar An... gi\|167051752, gi... - gi\|167399248\|ref\|ZP_02304772.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar An... gi\|166962995, gi... - gi\|167419001\|ref\|ZP_02310754.1\| hesB-like domain/nifU-like domain protein [Yersinia pestis biovar Or...	191.0	[0..1]	[191..1]
NFUA_SHELP - Fe/S biogenesis protein NfuA OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=nfuA PE=3 SV=1	190.0	[0..1]	[190..1]
NFUA_IDILO, GNTY... - Fe/S biogenesis protein nfuA OS=Idiomarina loihiensis GN=nfuA PE=3 SV=1, Protein gntY - Idiomarina l... NFUA_IDILO - Fe/S biogenesis protein NfuA OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=n...	190.0	[0..1]	[191..1]
gi\|88861082, gi\|... - gi\|88861082\|ref\|ZP_01135717.1\| hypothetical protein PTD2_16836 [Pseudoalteromonas tunicata D2], gi\|8...	190.0	[0..1]	[191..1]
NFUA_SHESR - Fe/S biogenesis protein NfuA OS=Shewanella sp. (strain MR-7) GN=nfuA PE=3 SV=1	190.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRISDAAQA HFAKLLANQE EGTQIRVFVI NPGTPNAECG VSYCPPDAVE ATDTALKFDL  60
   61 LTAYVDELSA PYLEDAEIDF VTDQLGSQLT LKAPNAKMRK VA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1r94A
Description:	Crystal Structure of IscA (MERCURY DERIVATIVE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2 iron, 2 sulfur cluster binding	1.71468673917586	bayes_pls_golite062009
iron-sulfur cluster binding	1.33125375529348	bayes_pls_golite062009
metal cluster binding	1.33125375529348	bayes_pls_golite062009
binding	0.700615110946341	bayes_pls_golite062009
protein binding	0.15305983062661	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [103-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDAPLMERVE YMLQSQINPQ LAGHGGRVSL MEITEDGYAI LQFGGGCNGC SMVDVTLKEG  60
   61 IEKQLLNEFP ELKGVRDLTE HQRGEHSYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1vehA
Description:	Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.788558668229677	bayes_pls_golite062009
2 iron, 2 sulfur cluster binding	0.233615476766167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: