YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254792164, gi...
Organism:	Escherichia coli O157:H7 str. TW14359
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254792164, gi....

Description	E-value	Query Range	Subject Range
YCCT_SHIF8 - UPF0319 protein YccT OS=Shigella flexneri serotype 5b (strain 8401) GN=yccT PE=3 SV=1	250.0	[0..1]	[220..1]
YCCT_ECO55 - UPF0319 protein YccT OS=Escherichia coli (strain 55989 / EAEC) GN=yccT PE=3 SV=1 gi\|75513417, gi\|... - gi\|75513417\|ref\|ZP_00735821.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_ECOHS - UPF0319 protein YccT OS=Escherichia coli O9:H4 (strain HS) GN=yccT PE=3 SV=1 gi\|124529156, gi... - gi\|124529156\|ref\|ZP_01700266.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500111\|gb... YCCT_ECOLC - UPF0319 protein YccT OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yccT PE=3 SV=1	249.0	[0..1]	[220..1]
gi\|83570628, gi\|... - gi\|83570628\|ref\|ZP_00922072.1\| COG3110: Uncharacterized protein conserved in bacteria [Shigella dyse...	248.0	[0..1]	[220..1]
YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1 YCCT_SALPC - UPF0319 protein YccT OS=Salmonella paratyphi C (strain RKS4594) GN=yccT PE=3 SV=1 gi\|204320308, gi... - gi\|204930849\|ref\|ZP_03221722.1\| protein YccT [Salmonella enterica subsp. enterica serovar Javiana st... YCCT_SALNS - UPF0319 protein YccT OS=Salmonella newport (strain SL254) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein YccT OS=Salmonella choleraesuis (strain SC-B67) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1	243.0	[0..1]	[220..1]
YCCT_SALTY - UPF0319 protein yccT OS=Salmonella typhimurium GN=yccT PE=3 SV=1 YCCT_SALTI - UPF0319 protein yccT OS=Salmonella typhi GN=yccT PE=3 SV=1 YCCT_SALTI - UPF0319 protein YccT OS=Salmonella typhi GN=yccT PE=3 SV=1 YCCT_SALTY - UPF0319 protein yccT OS=Salmonella typhimurium GN=yccT PE=3 SV=1 gi\|16759958 - gi\|16759958\|ref\|NP_455575.1\| hypothetical protein STY1099 [Salmonella enterica subsp. enterica serov... YCCT_SALTY - UPF0319 protein YccT OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yccT PE=3 SV... gi\|29142270, gi\|... - gi\|29142270\|ref\|NP_805612.1\| hypothetical protein t1843 [Salmonella enterica subsp. enterica serovar... gi\|167552666, gi... - gi\|205322743\|gb\|EDZ10582.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YCCT_SALPB - UPF0319 protein yccT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yccT PE=3 SV=1 gi\|213622022 - gi\|213622022\|ref\|ZP_03374805.1\| hypothetical protein SentesTyp_32661 [Salmonella enterica subsp. ent... gi\|213582517 - gi\|213582517\|ref\|ZP_03364343.1\| hypothetical protein SentesTyph_15483 [Salmonella enterica subsp. en... gi\|213425896 - gi\|213425896\|ref\|ZP_03358646.1\| hypothetical protein SentesTyphi_09729 [Salmonella enterica subsp. e... gi\|213160862 - gi\|213160862\|ref\|ZP_03346572.1\| hypothetical protein Salmoneentericaenterica_12748 [Salmonella enter... gi\|214001662 - gi\|214001662\|ref\|ZP_03412397.1\| hypothetical protein Salmonellentericaenterica_14879 [Salmonella ent... gi\|213857355 - gi\|213857355\|ref\|ZP_03384326.1\| hypothetical protein SentesT_19465 [Salmonella enterica subsp. enter... gi\|197265344, gi... - gi\|197265344\|ref\|ZP_03165418.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|168821816, gi... - gi\|205341749\|gb\|EDZ28513.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168264162, gi... - gi\|205347344\|gb\|EDZ33975.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327289, gi... - gi\|205327289\|gb\|EDZ14053.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213028754 - gi\|213028754\|ref\|ZP_03343201.1\| hypothetical protein Salmonelentericaenterica_43633 [Salmonella ente... YCCT_SALEP - UPF0319 protein YccT OS=Salmonella enteritidis PT4 (strain P125109) GN=yccT PE=3 SV=1 YCCT_SALG2 - UPF0319 protein YccT OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yccT PE=3 SV=1 gi\|200390845, gi... - gi\|200390845\|ref\|ZP_03217456.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCCT_SALPB - UPF0319 protein YccT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yccT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yccT] [protein=hypothetical protein] [protein_id=YP_005236811.1] [location=complement(1127421....	243.0	[0..1]	[220..1]
YCCT_SALPA - UPF0319 protein YccT OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yccT PE=3 SV=1 YCCT_SALPA - UPF0319 protein yccT OS=Salmonella paratyphi A GN=yccT PE=3 SV=1 YCCT_SALPK - UPF0319 protein YccT OS=Salmonella paratyphi A (strain AKU_12601) GN=yccT PE=3 SV=1	238.0	[0..1]	[220..1]
gi\|167419894, gi... - gi\|167419894\|ref\|ZP_02311647.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167048302, gi... - gi\|167402336\|ref\|ZP_02307804.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167467234 - gi\|167467234\|ref\|ZP_02331938.1\| hypothetical protein YpesF_04910 [Yersinia pestis FV-1] gi\|167057028, gi... - gi\|167424179\|ref\|ZP_02315932.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... Y1460_YERPS - UPF0319 protein YPTB1460 OS=Yersinia pseudotuberculosis GN=YPTB1460 PE=3 SV=1 gi\|149290957, gi... - gi\|149366583\|ref\|ZP_01888617.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290957\|... Y1566_YERPB - UPF0319 protein YPTS_1566 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1566 PE=... Y1442_YERPE - UPF0319 protein YPO1442/y2728/YP_1333 OS=Yersinia pestis GN=YPO1442 PE=3 SV=1 Y1532_YERPP - UPF0319 protein YPDSF_1532 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1532 PE=3 SV=1 Y2623_YERPY - UPF0319 protein YPK_2623 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2623 PE=3... gi\|165923595, gi... - gi\|165924535\|ref\|ZP_02220367.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166211350, gi... - gi\|166211350\|ref\|ZP_02237385.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011956, gi... - gi\|166011956\|ref\|ZP_02232854.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229697783, gi... - gi\|229841417\|ref\|ZP_04461576.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229689135, gi... - gi\|229843527\|ref\|ZP_04463670.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229703770, gi... - gi\|229894372\|ref\|ZP_04509555.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970377... Y2534_YERP3 - UPF0319 protein YpsIP31758_2534 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|165911929, gi... - gi\|89103148\|ref\|ZP_01175739.1\| COG3110: Uncharacterized protein conserved in bacteria [Yersinia pest... Y734_YERPA - UPF0319 protein YPA_0734 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0734 PE=3 SV=1 Y2537_YERPN - UPF0319 protein YPN_2537 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2537 PE=3 SV=1 gi\|45441160, gi\|... - gi\|45441160\|ref\|NP_992699.1\| hypothetical protein YP_1333 [Yersinia pestis biovar Microtus str. 9100... gi\|22126606, gi\|... - gi\|22126606\|ref\|NP_670029.1\| hypothetical protein y2728 [Yersinia pestis KIM], gi\|21959614\|gb\|AAM862... gi\|115347199, gi... - gi\|218928588\|ref\|YP_002346463.1\| hypothetical protein YPO1442 [Yersinia pestis CO92], gi\|16121720\|re... Y1460_YERPS - UPF0319 protein YPTB1460 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1460 PE=3...	235.0	[0..1]	[218..1]
Y3206_YERPG - UPF0319 protein YpAngola_A3206 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3206 PE=3...	234.0	[0..1]	[218..1]
gi\|238720360, gi... - gi\|77963136\|ref\|ZP_00826949.1\| COG3110: Uncharacterized protein conserved in bacteria [Yersinia moll...	233.0	[0..1]	[216..1]
gi\|238722605, gi... - gi\|77974895\|ref\|ZP_00830433.1\| COG3110: Uncharacterized protein conserved in bacteria [Yersinia fred...	233.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGIVTTLI ALCLPVSVFA TTLRLSTDVD LLVLDGKKVS SSLLRGADSI ELDNGPHQLV  60
   61 FRVEKTIHLS NSEERLYISP PLVVSFNTQL INQVNFRLPR LENEREANHF DAAPRLELLD 120
  121 GDATPIPVKL DILAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.479	N/A	N/A	b.1.18	E set domains
View	Download	0.311	N/A	N/A	a.138.1	Multiheme cytochromes
View	Download	0.266	N/A	N/A	g.14.1	Kringle-like
View	Download	0.238	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.230	N/A	N/A	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain

Predicted Domain #2

Region A:
Residues: [136-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTAKTIDYE VEVERYNKSA KRASLPQFAT MMADDSTLLS GVSELDAIPP QSQVLTEQRL  60
   61 KYWFKLADPQ TRNTFLQWAE KQPSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.331	0.248	protein binding	c.47.1	Thioredoxin-like
View	Download	0.318	0.001	protein binding	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.255	0.000	protein binding	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.311	N/A	N/A	c.55.7	Methylated DNA-protein cysteine methyltransferase domain
View	Download	0.268	N/A	N/A	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits