YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229700443, gi...
Organism:	Yersinia pestis Pestoides A
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229700443, gi....

Description	E-value	Query Range	Subject Range
gi\|238787567, gi... - gi\|77973991\|ref\|ZP_00829534.1\| COG2105: Uncharacterized conserved protein [Yersinia frederiksenii AT...	5.0E-36	[1..118]	[1..118]
gi\|77961843 - gi\|77961843\|ref\|ZP_00825672.1\| COG2105: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	8.0E-36	[1..118]	[1..118]
gi\|227836298, gi... - gi\|227886725\|ref\|ZP_04004530.1\| Ytfp protein [Escherichia coli 83972], gi\|227836298\|gb\|EEJ46764.1\| Y... gi\|89110942, gi\|... - gi\|89110942\|ref\|AP_004722.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|226901811, gi... - gi\|237703899\|ref\|ZP_04534380.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|238860575, gi... - gi\|238903328\|ref\|YP_002929124.1\| hypothetical protein BWG_3933 [Escherichia coli BW2952], gi\|2388605... gi\|251787475, gi... - gi\|251787475\|ref\|YP_003001779.1\| hypothetical protein B21_04057 [Escherichia coli BL21], gi\|24237974... gi\|253775149, gi... - gi\|253980212\|gb\|ACT45882.1\| hypothetical protein ECD_04093 [Escherichia coli BL21(DE3)], gi\|25377514... gi\|254037242, gi... - gi\|254037242\|ref\|ZP_04871319.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684034... gi\|254796243, gi... - gi\|254796243\|ref\|YP_003081080.1\| hypothetical protein ECSP_5324 [Escherichia coli O157:H7 str. TW143... gi\|75235467, gi\|... - gi\|75235467\|ref\|ZP_00719675.1\| COG2105: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|110346179, gi... - gi\|110644587\|ref\|YP_672317.1\| hypothetical protein ECP_4475 [Escherichia coli 536], gi\|110346179\|gb\|... gi\|253976056 - gi\|253976056\|gb\|ACT41727.1\| hypothetical protein ECB_04093 [Escherichia coli B str. REL606] gi\|75242386, gi\|... - gi\|75242386\|ref\|ZP_00726148.1\| COG2105: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110808032, gi... - gi\|110808032\|ref\|YP_691552.1\| hypothetical protein SFV_4266 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|75212221, gi\|... - gi\|75212221\|ref\|ZP_00712261.1\| COG2105: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|75229597, gi\|... - gi\|75229597\|ref\|ZP_00716136.1\| COG2105: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|74314703, gi\|... - gi\|74314703\|ref\|YP_313122.1\| hypothetical protein SSON_4407 [Shigella sonnei Ss046], gi\|73858180\|gb\|... gi\|81243630, gi\|... - gi\|82779482\|ref\|YP_405831.1\| hypothetical protein SDY_4459 [Shigella dysenteriae Sd197], gi\|81243630... gi\|75258326, gi\|... - gi\|75258326\|ref\|ZP_00729757.1\| COG2105: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|91075353, gi\|... - gi\|91213779\|ref\|YP_543765.1\| hypothetical protein UTI89_C4830 [Escherichia coli UTI89], gi\|91075353\|... gi\|75515463, gi\|... - gi\|75515463\|ref\|ZP_00737620.1\| COG2105: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|13364677, gi\|... - gi\|15834454\|ref\|NP_313227.1\| hypothetical protein ECs5200 [Escherichia coli O157:H7 str. Sakai], gi\|... YTFP_SHIFL - Gamma-glutamylcyclotransferase family protein YtfP OS=Shigella flexneri GN=ytfP PE=3 SV=1 gi\|24054786, gi\|... - gi\|24115466\|ref\|NP_709976.1\| hypothetical protein SF4265 [Shigella flexneri 2a str. 301], gi\|2405478... YTFP_ECOL6 - Gamma-glutamylcyclotransferase family protein YtfP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|30065486, gi\|... - gi\|30065486\|ref\|NP_839657.1\| hypothetical protein S4529 [Shigella flexneri 2a str. 2457T], gi\|300437... YTFP_ECO57 - Gamma-glutamylcyclotransferase family protein YtfP OS=Escherichia coli O157:H7 GN=ytfP PE=3 SV=1 gi\|157079094, gi... - gi\|75188937\|ref\|ZP_00702204.1\| COG2105: Uncharacterized conserved protein [Escherichia coli E24377A]... EG12516 - GGCT-like protein / Gamma-glutamyl cyclotransferase (GGCT) domain protein, function unknown gi\|75198075, gi\|... - gi\|75198075\|ref\|ZP_00708145.1\| COG2105: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|15804813, gi\|... - gi\|15804813\|ref\|NP_290854.1\| hypothetical protein Z5833 [Escherichia coli O157:H7 EDL933], gi\|125192... gi\|194417867, gi... - gi\|83569407\|ref\|ZP_00920861.1\| COG2105: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|194437840, gi... - gi\|83586745\|ref\|ZP_00925377.1\| COG2105: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|169756691, gi... - gi\|170021763\|ref\|YP_001726717.1\| AIG2 family protein [Escherichia coli ATCC 8739], gi\|169756691\|gb\|A... gi\|189379560, gi... - gi\|189379560\|gb\|EDU97976.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170520655, gi... - gi\|170682937\|ref\|YP_001746625.1\| hypothetical protein EcSMS35_4701 [Escherichia coli SMS-3-5], gi\|17... gi\|170083666, gi... - gi\|170083666\|ref\|YP_001732986.1\| hypothetical protein ECDH10B_4417 [Escherichia coli str. K-12 subst... gi\|208808635, gi... - gi\|208808635\|ref\|ZP_03250972.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937249 - gi\|195937249\|ref\|ZP_03082631.1\| hypothetical protein EscherichcoliO157_12475 [Escherichia coli O157:... gi\|208739423, gi... - gi\|208819300\|ref\|ZP_03259620.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208812692, gi... - gi\|208812692\|ref\|ZP_03254021.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|188014841, gi... - gi\|188014841\|gb\|EDU52963.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168760470, gi... - gi\|189368956\|gb\|EDU87372.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168754798, gi... - gi\|189357882\|gb\|EDU76301.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|187770202, gi... - gi\|187770202\|gb\|EDU34046.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168766507, gi... - gi\|189363970\|gb\|EDU82389.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168784865, gi... - gi\|189374827\|gb\|EDU93243.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|188999750, gi... - gi\|188999750\|gb\|EDU68736.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|218434932, gi... - gi\|218707835\|ref\|YP_002415354.1\| hypothetical protein ECUMN_4758 [Escherichia coli UMN026], gi\|21843... gi\|218702925, gi... - gi\|218702925\|ref\|YP_002410554.1\| hypothetical protein ECIAI39_4693 [Escherichia coli IAI39], gi\|2183... gi\|117626572, gi... - gi\|117626572\|ref\|YP_859895.1\| hypothetical protein APECO1_2166 [Escherichia coli APEC O1], gi\|115515... gi\|124500730, gi... - gi\|124528288\|ref\|ZP_01699612.1\| protein of unknown function UPF0131 [Escherichia coli B], gi\|1245007... gi\|209921719, gi... - gi\|209921719\|ref\|YP_002295803.1\| hypothetical protein ECSE_4528 [Escherichia coli SE11], gi\|20991497... gi\|209160558, gi... - gi\|209399158\|ref\|YP_002273766.1\| hypothetical protein ECH74115_5740 [Escherichia coli O157:H7 str. E... gi\|217322208, gi... - gi\|217325987\|ref\|ZP_03442071.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215489571, gi... - gi\|215489571\|ref\|YP_002332002.1\| hypothetical protein E2348C_4552 [Escherichia coli O127:H6 str. E23... gi\|218363543, gi... - gi\|218556774\|ref\|YP_002389688.1\| hypothetical protein ECIAI1_4455 [Escherichia coli IAI1], gi\|218363... gi\|218359060, gi... - gi\|218551518\|ref\|YP_002385310.1\| hypothetical protein EFER_4302 [Escherichia fergusonii ATCC 35469],... gi\|218697974, gi... - gi\|218697974\|ref\|YP_002405641.1\| hypothetical protein EC55989_4781 [Escherichia coli 55989], gi\|2183... gi\|218430177, gi... - gi\|218692613\|ref\|YP_002400825.1\| hypothetical protein ECED1_5080 [Escherichia coli ED1a], gi\|2184301... YTFP_ECOL6 - Gamma-glutamylcyclotransferase family protein ytfP OS=Escherichia coli O6 GN=ytfP PE=3 SV=1 EG12516 - GGCT-like protein / Gamma-glutamyl cyclotransferase (GGCT) domain protein, function unknown YTFP_ECOLI - UPF0131 protein ytfP - Escherichia coli	1.0E-35	[1..113]	[1..113]
gi\|81247938, gi\|... - gi\|82546527\|ref\|YP_410474.1\| hypothetical protein SBO_4221 [Shigella boydii Sb227], gi\|81247938\|gb\|A... gi\|187732144, gi... - gi\|75179326\|ref\|ZP_00699330.1\| COG2105: Uncharacterized conserved protein [Shigella boydii BS512], g...	1.0E-35	[1..113]	[1..113]
gi\|58177343 - gi\|58177343\|pdb\|1XHS\|A Chain A, Solution Nmr Structure Of Protein Ytfp From Escherichia Coli. Northe...	1.0E-35	[1..113]	[1..113]
gi\|77958765 - gi\|77958765\|ref\|ZP_00822793.1\| COG2105: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	1.0E-35	[1..118]	[1..118]
gi\|205332954, gi... - gi\|205332954\|gb\|EDZ19718.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238910568 - gi\|238910568\|ref\|ZP_04654405.1\| hypothetical protein SentesTe_05448 [Salmonella enterica subsp. ente... gi\|168234552, gi... - gi\|197291893\|gb\|EDY31243.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205336996, gi... - gi\|205336996\|gb\|EDZ23760.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168262559, gi... - gi\|205348672\|gb\|EDZ35303.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323873, gi... - gi\|205323873\|gb\|EDZ11712.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167991187, gi... - gi\|205330262\|gb\|EDZ17026.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16422973, gi\|... - gi\|16767657\|ref\|NP_463272.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16422973\|... gi\|205274949, gi... - gi\|205355168\|ref\|YP_002228969.1\| hypothetical protein SG4256 [Salmonella enterica subsp. enterica se... gi\|16505539, gi\|... - gi\|25351292\|pir\|\|AF1055 conserved hypothetical protein ytfP [imported] - Salmonella enterica subsp. ... gi\|207859558, gi... - gi\|207859558\|ref\|YP_002246209.1\| hypothetical protein SEN4180 [Salmonella enterica subsp. enterica s... gi\|16763231 - gi\|16763231\|ref\|NP_458848.1\| hypothetical protein STY4770 [Salmonella enterica subsp. enterica serov... gi\|213022123 - gi\|213022123\|ref\|ZP_03336570.1\| hypothetical protein Salmonelentericaenterica_05382 [Salmonella ente... gi\|29140349, gi\|... - gi\|29144710\|ref\|NP_808052.1\| hypothetical protein t4465 [Salmonella enterica subsp. enterica serovar... gi\|213422399 - gi\|213422399\|ref\|ZP_03355465.1\| hypothetical protein Salmonentericaenterica_33550 [Salmonella enteri... gi\|197096604, gi... - gi\|197365127\|ref\|YP_002144764.1\| hypothetical protein SSPA3930 [Salmonella enterica subsp. enterica ... gi\|198246221, gi... - gi\|198246221\|ref\|YP_002218294.1\| hypothetical protein SeD_A4810 [Salmonella enterica subsp. enterica... gi\|199604310, gi... - gi\|200387212\|ref\|ZP_03213824.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204323609, gi... - gi\|204926944\|ref\|ZP_03218146.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194471037, gi... - gi\|194471037\|ref\|ZP_03077021.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194737100, gi... - gi\|194737100\|ref\|YP_002117351.1\| hypothetical protein SeSA_A4680 [Salmonella enterica subsp. enteric... gi\|197248983, gi... - gi\|197248983\|ref\|YP_002149326.1\| hypothetical protein SeAg_B4691 [Salmonella enterica subsp. enteric... gi\|197261790, gi... - gi\|197261790\|ref\|ZP_03161864.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|195632619, gi... - gi\|195632619\|gb\|EDX51073.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168821175, gi... - gi\|205342256\|gb\|EDZ29020.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194402075, gi... - gi\|194443412\|ref\|YP_002043668.1\| hypothetical protein SNSL254_A4776 [Salmonella enterica subsp. ente... gi\|194449694, gi... - gi\|194449694\|ref\|YP_002048454.1\| hypothetical protein SeHA_C4831 [Salmonella enterica subsp. enteric... gi\|214002807 - gi\|214002807\|ref\|ZP_03413542.1\| hypothetical protein Salmonellentericaenterica_21821 [Salmonella ent... gi\|213428286 - gi\|213428286\|ref\|ZP_03361036.1\| hypothetical protein SentesTyphi_23635 [Salmonella enterica subsp. e... gi\|213622634 - gi\|213622634\|ref\|ZP_03375417.1\| hypothetical protein SentesTyp_36046 [Salmonella enterica subsp. ent... gi\|213649717 - gi\|213649717\|ref\|ZP_03379770.1\| hypothetical protein SentesTy_21965 [Salmonella enterica subsp. ente... gi\|213855329 - gi\|213855329\|ref\|ZP_03383569.1\| hypothetical protein SentesT_15192 [Salmonella enterica subsp. enter... gi\|62182856, gi\|... - gi\|62182856\|ref\|YP_219273.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|56130461, gi\|... - gi\|56416204\|ref\|YP_153279.1\| hypothetical protein SPA4231 [Salmonella enterica subsp. enterica serov...	2.0E-34	[1..113]	[1..113]
gi\|238792994, gi... - gi\|77977607\|ref\|ZP_00833051.1\| COG2105: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	2.0E-34	[1..118]	[1..118]
gi\|37528371, gi\|... - gi\|37528371\|ref\|NP_931716.1\| hypothetical protein plu4552 [Photorhabdus luminescens subsp. laumondii...	6.0E-34	[1..114]	[1..114]
gi\|75854567, gi\|... - gi\|75854567\|ref\|ZP_00762253.1\| COG2105: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	1.0E-32	[3..110]	[5..113]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIVYGSLR RKQGNSHWMT DAQLLGEHDL EGYEMYNLGH YPAVIPGDGT VHCEVYRINS  60
   61 SIMNELDELK SNTKDYRREL IKTPYGSAWI YLYRLPTEGL PRIYSGDWLK RHEEIDKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.154902
Match:	1xhsA
Description:	Solution structure of the hypothetical protein ytfP from Escherichia coli. Northeast Structural Genomics target ER111.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits